RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 CAVIN2O95810 425 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 EIF2AK2P19525 551 aaKnown RBP13.51□□□□□ -0.25
CLIP1-208ENST00000537004 EDNRBP24530 442 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 ACLYP53396 1101 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 RTP1P59025 263 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 PDE4DQ08499 809 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 STX1AQ16623 288 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 TRIM60Q495X7 471 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 GLIPR1L2Q4G1C9 344 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 HS1BP3Q53T59 392 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 LUZP1Q86V48 1076 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 TNFRSF25Q93038 417 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 RMDN3Q96TC7 470 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 CBX8Q9HC52 389 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 RRAGDQ9NQL2 400 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-208ENST00000537004 HPSEQ9Y251 543 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 FAM237AA0A1B0GTK4 181 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 ADCY5O95622 1261 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 ASGR1P07306 291 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 ATP2B1P20020 1258 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 SYKP43405 635 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 ZNF165P49910 485 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 GJA9P57773 515 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 EARS2Q5JPH6 523 aaKnown RBP13.51□□□□□ -0.25
CLIP1-208ENST00000537004 TLK2Q86UE8 772 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 MCF2L2Q86YR7 1114 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 DNERQ8NFT8 737 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 ERCC4Q92889 916 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-208ENST00000537004 WDR11Q9BZH6 1224 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 VTA1Q9NP79 307 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 CEP131Q9UPN4 1083 aa13.51□□□□□ -0.25
CLIP1-208ENST00000537004 NLRP5P59047 1200 aa13.5□□□□□ -0.25
CLIP1-208ENST00000537004 HABP4Q5JVS0 413 aaKnown RBP13.5□□□□□ -0.25
CLIP1-208ENST00000537004 COPS5Q92905 334 aa13.5□□□□□ -0.25
CLIP1-208ENST00000537004 ZFP91Q96JP5 570 aaPredicted RBP13.5□□□□□ -0.25
CLIP1-208ENST00000537004 TIGD1Q96MW7 591 aa13.5□□□□□ -0.25
CLIP1-208ENST00000537004 SPZ1Q9BXG8 430 aa13.5□□□□□ -0.25
CLIP1-208ENST00000537004 SH3GLB2Q9NR46 395 aa13.5□□□□□ -0.25
CLIP1-208ENST00000537004 FBXO2Q9UK22 296 aaPredicted RBP13.5□□□□□ -0.25
CLIP1-208ENST00000537004 CDH23Q9H251 3354 aa13.5□□□□□ -0.25
CLIP1-208ENST00000537004 ARIH2O95376 493 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 HSD17B4P51659 736 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 PLCB2Q00722 1185 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 IQSEC1Q6DN90 963 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 C11orf57Q6ZUT1 292 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-208ENST00000537004 FCHSD1Q86WN1 690 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 NSUN6Q8TEA1 469 aaKnown RBP13.49□□□□□ -0.25
CLIP1-208ENST00000537004 GPKOWQ92917 476 aaPredicted RBP eCLIP13.49□□□□□ -0.25
CLIP1-208ENST00000537004 LZTS2Q9BRK4 669 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 UPF3AQ9H1J1 476 aaKnown RBP13.49□□□□□ -0.25
CLIP1-208ENST00000537004 SPC25Q9HBM1 224 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 KIAA1468Q9P260 1216 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 NOL7Q9UMY1 257 aaKnown RBP13.49□□□□□ -0.25
CLIP1-208ENST00000537004 AP5Z1O43299 807 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 PQBP1O60828 265 aaKnown RBP13.49□□□□□ -0.25
CLIP1-208ENST00000537004 MAGEA10P43363 369 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-208ENST00000537004 MDM2Q00987 491 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-208ENST00000537004 TLE2Q04725 743 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 DUSP28Q4G0W2 176 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 ARHGEF16Q5VV41 709 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 CXCL17Q6UXB2 119 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 SH3RF1Q7Z6J0 888 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 RRP36Q96EU6 259 aaKnown RBP13.49□□□□□ -0.25
CLIP1-208ENST00000537004 PRO3102Q9H379 93 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 STARD7Q9NQZ5 370 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 ANO10Q9NW15 660 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 CCDC39Q9UFE4 941 aa13.49□□□□□ -0.25
CLIP1-208ENST00000537004 CST5P28325 142 aaPredicted RBP13.48□□□□□ -0.25
CLIP1-208ENST00000537004 SNX17Q15036 470 aa13.48□□□□□ -0.25
CLIP1-208ENST00000537004 FSCN1Q16658 493 aaKnown RBP13.48□□□□□ -0.25
CLIP1-208ENST00000537004 SEPT14Q6ZU15 432 aa13.48□□□□□ -0.25
CLIP1-208ENST00000537004 ZSCAN30Q86W11 494 aa13.48□□□□□ -0.25
CLIP1-208ENST00000537004 IL31RAQ8NI17 732 aa13.48□□□□□ -0.25
CLIP1-208ENST00000537004 VTI1AQ96AJ9 217 aa13.48□□□□□ -0.25
CLIP1-208ENST00000537004 TSEN34Q9BSV6 310 aaKnown RBP13.48□□□□□ -0.25
CLIP1-208ENST00000537004 PRDM5Q9NQX1 630 aaPredicted RBP13.48□□□□□ -0.25
CLIP1-208ENST00000537004 PXMP2Q9NR77 195 aa13.48□□□□□ -0.25
CLIP1-208ENST00000537004 KCNH3Q9ULD8 1083 aa13.48□□□□□ -0.25
CLIP1-208ENST00000537004 SRPRBQ9Y5M8 271 aaKnown RBP13.48□□□□□ -0.25
CLIP1-208ENST00000537004 MORC2Q9Y6X9 1032 aaPredicted RBP13.48□□□□□ -0.25
CLIP1-208ENST00000537004 COL6A3P12111 3177 aa13.48□□□□□ -0.25
CLIP1-208ENST00000537004 A0A087WWV3 80 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 MOXD2PA6NHM9 499 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 PTMAP06454 111 aaKnown RBP13.47□□□□□ -0.25
CLIP1-208ENST00000537004 NR3C2P08235 984 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 GRIN1Q05586 938 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 USP17L6PQ6QN14 398 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 ZNF579Q8NAF0 562 aaKnown RBP13.47□□□□□ -0.25
CLIP1-208ENST00000537004 GDF15Q99988 308 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 AP5M1Q9H0R1 490 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 SEC63Q9UGP8 760 aaKnown RBP13.47□□□□□ -0.25
CLIP1-208ENST00000537004 LOC102724159A0A0B4J2E5 919 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 RBM47A0AV96 593 aaKnown RBP13.47□□□□□ -0.25
CLIP1-208ENST00000537004 GCOM1H8Y6P7 765 aaPredicted RBP13.47□□□□□ -0.25
CLIP1-208ENST00000537004 WNT7AO00755 349 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 ADAMTS3O15072 1205 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 BMP15O95972 392 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 POLR2MP0CAP2 368 aa13.47□□□□□ -0.25
CLIP1-208ENST00000537004 TXNP10599 105 aaKnown RBP13.47□□□□□ -0.25
CLIP1-208ENST00000537004 MYCLP12524 364 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms