RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 MTMR4Q9NYA4 1195 aa15.4■□□□□ 0.06
LIG1-203ENST00000536218 DMGDHQ9UI17 866 aaKnown RBP15.4■□□□□ 0.06
LIG1-203ENST00000536218 MAST2Q6P0Q8 1798 aa15.39■□□□□ 0.06
LIG1-203ENST00000536218 ANKRD33BA6NCL7 494 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 EIF4E1BA6NMX2 242 aaKnown RBP15.39■□□□□ 0.05
LIG1-203ENST00000536218 A6NNZ2 444 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 KIF4AO95239 1232 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 RXRBP28702 533 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 TRAPPC10P48553 1259 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 TUBB8Q3ZCM7 444 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 CYP26C1Q6V0L0 522 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 MLKLQ8NB16 471 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 CHP1Q99653 195 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 MAPK8IP1Q9UQF2 711 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 LAMB1P07942 1786 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 DNM1LO00429 736 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 IPO7O95373 1038 aaKnown RBP15.39■□□□□ 0.05
LIG1-203ENST00000536218 SLC16A2P36021 539 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 CRKP46108 304 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 SF3A3Q12874 501 aaKnown RBP eCLIP15.39■□□□□ 0.052e-6■■■■□ 21
LIG1-203ENST00000536218 SHROOM1Q2M3G4 852 aaPredicted RBP15.39■□□□□ 0.05
LIG1-203ENST00000536218 APOBEC3HQ6NTF7 200 aaKnown RBP15.39■□□□□ 0.05
LIG1-203ENST00000536218 SH3GLB2Q9NR46 395 aa15.39■□□□□ 0.05
LIG1-203ENST00000536218 SLC8A3P57103 927 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 EN1Q05925 392 aaPredicted RBP15.38■□□□□ 0.05
LIG1-203ENST00000536218 DTHD1Q6ZMT9 781 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 LRRC1Q9BTT6 524 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 CD44P16070 742 aaKnown RBP15.38■□□□□ 0.05
LIG1-203ENST00000536218 KRT9P35527 623 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 CUL4BQ13620 913 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 FLAD1Q8NFF5 587 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 ZIM3Q96PE6 472 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 TMEM260Q9NX78 707 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 RNF225M0QZC1 329 aaPredicted RBP15.38■□□□□ 0.05
LIG1-203ENST00000536218 CCNT1O60563 726 aaKnown RBP15.38■□□□□ 0.05
LIG1-203ENST00000536218 NR1D1P20393 614 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 CCDC96Q2M329 555 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 TTBK2Q6IQ55 1244 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 PSMB7Q99436 277 aa15.38■□□□□ 0.05
LIG1-203ENST00000536218 ACTR5Q9H9F9 607 aaPredicted RBP15.38■□□□□ 0.05
LIG1-203ENST00000536218 EPN1Q9Y6I3 576 aaPredicted RBP15.38■□□□□ 0.05
LIG1-203ENST00000536218 PES1O00541 588 aaKnown RBP15.37■□□□□ 0.05
LIG1-203ENST00000536218 N4BP3O15049 544 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 AOC3Q16853 763 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 NT5DC1Q5TFE4 455 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 C4orf32Q8N8J7 132 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 LZTS2Q9BRK4 669 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 SPZ1Q9BXG8 430 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 VPS16Q9H269 839 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 ABHD10Q9NUJ1 306 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 HLA-DOAP06340 250 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 STAT6P42226 847 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 GABPAQ06546 454 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 ZC3H12AQ5D1E8 599 aaKnown RBP15.37■□□□□ 0.05
LIG1-203ENST00000536218 KCTD1Q719H9 257 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 CYFIP2Q96F07 1278 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 CCDC43Q96MW1 224 aaKnown RBP15.37■□□□□ 0.05
LIG1-203ENST00000536218 UIMC1Q96RL1 719 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 C6orf50Q9HD87 102 aa15.37■□□□□ 0.05
LIG1-203ENST00000536218 IDEP14735 1019 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 UBA7P41226 1012 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 ICA1Q05084 483 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 DPYDQ12882 1025 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 TRAF1Q13077 416 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 CFAP58Q5T655 872 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 HIBCHQ6NVY1 386 aaPredicted RBP15.36■□□□□ 0.05
LIG1-203ENST00000536218 RPGRIP1Q96KN7 1286 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 MTRQ99707 1265 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 OSBPL7Q9BZF2 842 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 PDGFDQ9GZP0 370 aaPredicted RBP15.36■□□□□ 0.05
LIG1-203ENST00000536218 SLC39A2Q9NP94 309 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 NAV1Q8NEY1 1877 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 MACROD2A1Z1Q3 448 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 ECE2O60344 883 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 MYBL1P10243 752 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 RPS6KA3P51812 740 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 PPP1R7Q15435 360 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 PNMA8AQ86V59 439 aaPredicted RBP15.36■□□□□ 0.05
LIG1-203ENST00000536218 ELOA2Q8IYF1 753 aaPredicted RBP15.36■□□□□ 0.05
LIG1-203ENST00000536218 NOD2Q9HC29 1040 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 M0R2N6 131 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 NDUFA10O95299 355 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 FAM107AO95990 144 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 PECAM1P16284 738 aaPredicted RBP15.36■□□□□ 0.05
LIG1-203ENST00000536218 SHMT1P34896 483 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 RRAGBQ5VZM2 374 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 BZW1Q7L1Q6 419 aaKnown RBP15.36■□□□□ 0.05
LIG1-203ENST00000536218 PODNQ7Z5L7 613 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 SH3RF1Q7Z6J0 888 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 SPAG5Q96R06 1193 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 ADD3Q9UEY8 706 aaKnown RBP15.36■□□□□ 0.05
LIG1-203ENST00000536218 L3MBTL1Q9Y468 752 aa15.36■□□□□ 0.05
LIG1-203ENST00000536218 PSMD14O00487 310 aa15.35■□□□□ 0.05
LIG1-203ENST00000536218 UPP2O95045 317 aa15.35■□□□□ 0.05
LIG1-203ENST00000536218 ALS2CLQ60I27 953 aa15.35■□□□□ 0.05
LIG1-203ENST00000536218 IQCEQ6IPM2 695 aa15.35■□□□□ 0.05
LIG1-203ENST00000536218 TBCKQ8TEA7 893 aa15.35■□□□□ 0.05
LIG1-203ENST00000536218 TCP11Q8WWU5 503 aa15.35■□□□□ 0.05
LIG1-203ENST00000536218 ZMYND12Q9H0C1 365 aa15.35■□□□□ 0.05
LIG1-203ENST00000536218 SUGT1Q9Y2Z0 365 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms