RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 KBTBD12Q3ZCT8 623 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 ANKRD39Q53RE8 183 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 HHATQ5VTY9 493 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 RCSD1Q6JBY9 416 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 THAP5Q7Z6K1 395 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 UBE2Q1Q7Z7E8 422 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 VSIG10LQ86VR7 867 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 LMNTD2Q8IXW0 634 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 FLCNQ8NFG4 579 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 ERMNQ8TAM6 284 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 SNX21Q969T3 373 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 EXOC4Q96A65 974 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 ZBTB9Q96C00 473 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 TCTN2Q96GX1 697 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 BAG1Q99933 345 aaPredicted RBP6.27□□□□□ -1.41
CD44-236ENST00000533222 NOL6Q9H6R4 1146 aaKnown RBP6.27□□□□□ -1.41
CD44-236ENST00000533222 PAK6Q9NQU5 681 aaPredicted RBP6.27□□□□□ -1.41
CD44-236ENST00000533222 GPATCH2Q9NW75 528 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 ZNF446Q9NWS9 450 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 CLIP2Q9UDT6 1046 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 DUSP13Q9UII6 198 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 FBXO9Q9UK97 447 aaPredicted RBP6.27□□□□□ -1.41
CD44-236ENST00000533222 VAV3Q9UKW4 847 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 WDR37Q9Y2I8 494 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 RRP15Q9Y3B9 282 aaKnown RBP6.27□□□□□ -1.41
CD44-236ENST00000533222 PCDHA11Q9Y5I1 949 aa6.27□□□□□ -1.41
CD44-236ENST00000533222 POLR1AO95602 1720 aaPredicted RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 TMEM110-MUSTN1A8MSY1 372 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 FAM25EA8MYX2 175 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 GOLGA6L19H0YKK7 550 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 TBX1O43435 398 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 RTN2O75298 545 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 VAMP4O75379 141 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 MTRF1O75570 445 aaKnown RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 RTN3O95197 1032 aaPredicted RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 ITGA4P13612 1032 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 ELF1P32519 619 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 PSMD7P51665 324 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 MNAT1P51948 309 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 ZNF132P52740 706 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 DDX10Q13206 875 aaKnown RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 PRPF4BQ13523 1007 aaKnown RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 PPP2R5DQ14738 602 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 KIAA0753Q2KHM9 967 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 BRAPQ7Z569 592 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 ADAT2Q7Z6V5 191 aaKnown RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 LCA5Q86VQ0 697 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 CREG2Q8IUH2 290 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 ELOA2Q8IYF1 753 aaPredicted RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 FIBCD1Q8N539 461 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 GBP7Q8N8V2 638 aaPredicted RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 SYTL5Q8TDW5 730 aaPredicted RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 DDX11Q96FC9 970 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 BICD1Q96G01 975 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 CCDC34Q96HJ3 373 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 NAF1Q96HR8 494 aaKnown RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 RSRC1Q96IZ7 334 aaKnown RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 ZDHHC15Q96MV8 337 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 DSCC1Q9BVC3 393 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 OSBPL2Q9H1P3 480 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 TRIT1Q9H3H1 467 aaKnown RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 TSPY26PQ9H489 355 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 RABEP2Q9H5N1 569 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 PIF1Q9H611 641 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 CARS2Q9HA77 564 aaKnown RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 EXOC1Q9NV70 894 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 SNTG2Q9NY99 539 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 PUF60Q9UHX1 559 aaKnown RBP6.26□□□□□ -1.41
CD44-236ENST00000533222 SLC5A6Q9Y289 635 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 TMEM98Q9Y2Y6 226 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 CCNB3Q8WWL7 1395 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 MAP3K5Q99683 1374 aa6.26□□□□□ -1.41
CD44-236ENST00000533222 KDM2BQ8NHM5 1336 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 FHAD1B1AJZ9 1412 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 ANKRD34BA5PLL1 514 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 GOLGA6L10A6NI86 522 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SMTNL1A8MU46 457 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 U2SURPO15042 1029 aaKnown RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 BBOX1O75936 387 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 TUBB4AP04350 444 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 IDO1P14902 403 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 ZNF24P17028 368 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 LTKP29376 864 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 ATICP31939 592 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 MAN1A1P33908 653 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 CDR1P51861 262 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SLMAPQ14BN4 828 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 TCEAL1Q15170 157 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SEPT7Q16181 437 aaKnown RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 CNGA3Q16281 694 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 CCDC144BQ3MJ40 725 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 NOL9Q5SY16 702 aaKnown RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 ZPBP2Q6X784 338 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SYT10Q6XYQ8 523 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SEPT14Q6ZU15 432 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 SPATC1Q76KD6 591 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 DPH6Q7L8W6 267 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 CCDC170Q8IYT3 715 aa6.25□□□□□ -1.41
CD44-236ENST00000533222 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.25□□□□□ -1.41
CD44-236ENST00000533222 DAGLBQ8NCG7 672 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms