RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	MAGEB10	Q96LZ2	347 aa	Predicted RBP	6.99	□□□□□ -1.29
CD44-231	ENST00000531110	INTS7	Q9NVH2	962 aa	Known RBP	6.99	□□□□□ -1.29
CD44-231	ENST00000531110	HSPBP1	Q9NZL4	362 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	NDOR1	Q9UHB4	597 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	PALD1	Q9ULE6	856 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	HDAC5	Q9UQL6	1122 aa		6.99	□□□□□ -1.29
CD44-231	ENST00000531110	TMA7	Q9Y2S6	64 aa	Known RBP	6.99	□□□□□ -1.29
CD44-231	ENST00000531110	MRPL42	Q9Y6G3	142 aa	Known RBP	6.99	□□□□□ -1.29
CD44-231	ENST00000531110		B4E1Z4	1266 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	CDC45	O75419	566 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	ASGR2	P07307	311 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	GNAT1	P11488	350 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	FAM47C	Q5HY64	1035 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	C16orf59	Q7L2K0	433 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	IGDCC3	Q8IVU1	814 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	FAM126B	Q8IXS8	530 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	FBXW5	Q969U6	566 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	IPPK	Q9H8X2	491 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	PPARGC1A	Q9UBK2	798 aa	Known RBP	6.98	□□□□□ -1.29
CD44-231	ENST00000531110	PCDHB4	Q9Y5E5	795 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	HCFC2	Q9Y5Z7	792 aa		6.98	□□□□□ -1.29
CD44-231	ENST00000531110	CFAP65	Q6ZU64	1925 aa	Known RBP	6.97	□□□□□ -1.29
CD44-231	ENST00000531110	TCERG1	O14776	1098 aa	Known RBP	6.97	□□□□□ -1.29
CD44-231	ENST00000531110	PML	P29590	882 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	EPHA5	P54756	1037 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	CACNB2	Q08289	660 aa	Predicted RBP	6.97	□□□□□ -1.29
CD44-231	ENST00000531110	DMTN	Q08495	405 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	PLEKHG4	Q58EX7	1191 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	ETV3L	Q6ZN32	361 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	ATG14	Q6ZNE5	492 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	BRAP	Q7Z569	592 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	MILR1	Q7Z6M3	343 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	6.97	□□□□□ -1.29
CD44-231	ENST00000531110	B3GNT8	Q7Z7M8	397 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	SCLY	Q96I15	445 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	FEZ1	Q99689	392 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	CELF4	Q9BZC1	486 aa	Known RBP	6.97	□□□□□ -1.29
CD44-231	ENST00000531110	PNN	Q9H307	717 aa	Known RBP	6.97	□□□□□ -1.29
CD44-231	ENST00000531110	KCNK12	Q9HB15	430 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	FANCL	Q9NW38	375 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	MYOT	Q9UBF9	498 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	KCNG1	Q9UIX4	513 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	PLAA	Q9Y263	795 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	PCDHA8	Q9Y5H6	950 aa		6.97	□□□□□ -1.29
CD44-231	ENST00000531110	TCRBV5S2	A0A599	114 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	TCRBV16S1A1N1	A0A5B0	115 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	RFXAP	O00287	272 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	ASMTL	O95671	621 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	C1QTNF9	P0C862	333 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	RGS3	P49796	1198 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	EPHB3	P54753	998 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	RALBP1	Q15311	655 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	CASC1	Q6TDU7	716 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	CERS3	Q8IU89	383 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	PIP4K2C	Q8TBX8	421 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	JAM3	Q9BX67	310 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	TSPYL1	Q9H0U9	437 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	ASH2L	Q9UBL3	628 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	SMG5	Q9UPR3	1016 aa	Known RBP	6.96	□□□□□ -1.3
CD44-231	ENST00000531110	SIT1	Q9Y3P8	196 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	PCDHA9	Q9Y5H5	950 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	IRAK3	Q9Y616	596 aa		6.96	□□□□□ -1.3
CD44-231	ENST00000531110	EEA1	Q15075	1411 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	BUB1B	O60566	1050 aa	Predicted RBP	6.95	□□□□□ -1.3
CD44-231	ENST00000531110	RAPGEF3	O95398	923 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	ASL	P04424	464 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	HSD3B2	P26439	372 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	LACTB	P83111	547 aa	Predicted RBP	6.95	□□□□□ -1.3
CD44-231	ENST00000531110	GPR19	Q15760	415 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	KCNA10	Q16322	511 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	CC2D1B	Q5T0F9	858 aa	Known RBP	6.95	□□□□□ -1.3
CD44-231	ENST00000531110	L1TD1	Q5T7N2	865 aa	Known RBP	6.95	□□□□□ -1.3
CD44-231	ENST00000531110	GIMAP6	Q6P9H5	292 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	ZC3H18	Q86VM9	953 aa	Known RBP	6.95	□□□□□ -1.3
CD44-231	ENST00000531110	ANKLE2	Q86XL3	938 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	ZC3H7A	Q8IWR0	971 aa	Known RBP	6.95	□□□□□ -1.3
CD44-231	ENST00000531110	NLGN4X	Q8N0W4	816 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	ZNF830	Q96NB3	372 aa	Predicted RBP	6.95	□□□□□ -1.3
CD44-231	ENST00000531110	SGPP1	Q9BX95	441 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	GOLGA2P5	Q9HBQ8	144 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	RXFP1	Q9HBX9	757 aa		6.95	□□□□□ -1.3
CD44-231	ENST00000531110	MAGEC2	Q9UBF1	373 aa	Predicted RBP	6.95	□□□□□ -1.3
CD44-231	ENST00000531110	ZCCHC6	Q5VYS8	1495 aa	Known RBP	6.95	□□□□□ -1.3
CD44-231	ENST00000531110	DBX1	A6NMT0	343 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	PPP1R12A	O14974	1030 aa	Predicted RBP	6.94	□□□□□ -1.3
CD44-231	ENST00000531110	CKM	P06732	381 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	IGFALS	P35858	605 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	LINC00310	P59036	64 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	ST5	P78524	1137 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	PABPC4	Q13310	644 aa	Known RBP eCLIP	6.94	□□□□□ -1.3
CD44-231	ENST00000531110	ZNF385B	Q569K4	471 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	HSP90AB3P	Q58FF7	597 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	FIGN	Q5HY92	759 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	CILP2	Q8IUL8	1156 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	NLGN1	Q8N2Q7	840 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	NINJ1	Q92982	152 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	CLUHP3	Q96NS8	147 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	DTL	Q9NZJ0	730 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	DSE	Q9UL01	958 aa		6.94	□□□□□ -1.3
CD44-231	ENST00000531110	CCDC66	A2RUB6	948 aa		6.93	□□□□□ -1.3

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