RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-229	ENST00000528672	KRT15	P19012	456 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	AMY2B	P19961	511 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	GLDC	P23378	1020 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	NEK4	P51957	841 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	JAM2	P57087	298 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	ERVFRD-1	P60508	538 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	GABRE	P78334	506 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	STRN3	Q13033	797 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	TTF1	Q15361	905 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-229	ENST00000528672	SLC14A2	Q15849	920 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	CPZ	Q66K79	652 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	WDR75	Q8IWA0	830 aa	Known RBP	4.37	□□□□□ -1.71
CD44-229	ENST00000528672	RAVER1	Q8IY67	606 aa	Known RBP	4.37	□□□□□ -1.71
CD44-229	ENST00000528672	CCDC146	Q8IYE0	955 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	NLGN2	Q8NFZ4	835 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	LIN37	Q96GY3	246 aa	Predicted RBP	4.37	□□□□□ -1.71
CD44-229	ENST00000528672	C8orf48	Q96LL4	319 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	MMP19	Q99542	508 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	ACSL6	Q9UKU0	697 aa		4.37	□□□□□ -1.71
CD44-229	ENST00000528672	ZC3H12D	A2A288	527 aa	Known RBP	4.36	□□□□□ -1.71
CD44-229	ENST00000528672		M0R2C6	588 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	ARVCF	O00192	962 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	PEX14	O75381	377 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	KRT37	O76014	449 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	NPTXR	O95502	500 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	EYA4	O95677	639 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	TBC1D8	O95759	1140 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	FLT3	P36888	993 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	ARL4A	P40617	200 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	TBX4	P57082	545 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	GPR85	P60893	370 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	GRIN1	Q05586	938 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	NFE2	Q16621	373 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-229	ENST00000528672	MLANA	Q16655	118 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	PHF19	Q5T6S3	580 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	ACBD5	Q5T8D3	534 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-229	ENST00000528672	RNF219	Q5W0B1	726 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-229	ENST00000528672	CDCA2	Q69YH5	1023 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-229	ENST00000528672	CMIP	Q8IY22	773 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	PIP4K2C	Q8TBX8	421 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	WDR66	Q8TBY9	1149 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	COG1	Q8WTW3	980 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	TSR2	Q969E8	191 aa	Known RBP	4.36	□□□□□ -1.71
CD44-229	ENST00000528672	PCGF6	Q9BYE7	350 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	MYH16	Q9H6N6	1097 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	ZNF552	Q9H707	407 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-229	ENST00000528672	VTA1	Q9NP79	307 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	GPR27	Q9NS67	375 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	SLC5A4	Q9NY91	659 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	SAMD15	Q9P1V8	674 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	RIPOR2	Q9Y4F9	1068 aa		4.36	□□□□□ -1.71
CD44-229	ENST00000528672	TIMM13	Q9Y5L4	95 aa	Predicted RBP	4.36	□□□□□ -1.71
CD44-229	ENST00000528672	OR14I1	A6ND48	311 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	NUDT19	A8MXV4	375 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	DVL2	O14641	736 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	SLC27A2	O14975	620 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	SRGAP3	O43295	1099 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	KATNA1	O75449	491 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	ASL	P04424	464 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	APP	P05067	770 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	POU3F2	P20265	443 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-229	ENST00000528672	YBX1	P67809	324 aa	Known RBP	4.35	□□□□□ -1.71
CD44-229	ENST00000528672	ITK	Q08881	620 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	LSAMP	Q13449	338 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	PPP2R5A	Q15172	486 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	DHCR24	Q15392	516 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	PRR23B	Q6ZRT6	265 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	UBE2R2	Q712K3	238 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-229	ENST00000528672	OVCH1	Q7RTY7	1134 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	NECAB2	Q7Z6G3	386 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	PTRH1	Q86Y79	214 aa	Known RBP	4.35	□□□□□ -1.71
CD44-229	ENST00000528672	ZC3H7A	Q8IWR0	971 aa	Known RBP	4.35	□□□□□ -1.71
CD44-229	ENST00000528672	IFNL3	Q8IZI9	196 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	MAGEB10	Q96LZ2	347 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-229	ENST00000528672	CCDC140	Q96MF4	163 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	KRTAP17-1	Q9BYP8	105 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	TRIM8	Q9BZR9	551 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	NSUN3	Q9H649	340 aa	Known RBP	4.35	□□□□□ -1.71
CD44-229	ENST00000528672	SMURF1	Q9HCE7	757 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	TNFRSF12A	Q9NP84	129 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	DCP1A	Q9NPI6	582 aa	Predicted RBP	4.35	□□□□□ -1.71
CD44-229	ENST00000528672	WASF3	Q9UPY6	502 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	PHLDB1	Q86UU1	1377 aa		4.35	□□□□□ -1.71
CD44-229	ENST00000528672	LOC102724159	A0A0B4J2E5	919 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	TEX51	A0A1B0GUA7	166 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	CCDC66	A2RUB6	948 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	KIF3B	O15066	747 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	SGSM2	O43147	1006 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	TSPAN6	O43657	245 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	BRINP1	O60477	761 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	PDE6A	P16499	860 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	GRK2	P25098	689 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	GRK3	P35626	688 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	IGFALS	P35858	605 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	NCKAP1L	P55160	1127 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	RPL11	P62913	178 aa	Known RBP	4.34	□□□□□ -1.71
CD44-229	ENST00000528672	PWP2	Q15269	919 aa	Known RBP	4.34	□□□□□ -1.71
CD44-229	ENST00000528672	TESK1	Q15569	626 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	CFAP100	Q494V2	611 aa		4.34	□□□□□ -1.71
CD44-229	ENST00000528672	GORAB	Q5T7V8	394 aa		4.34	□□□□□ -1.71

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