RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 OTOP1Q7RTM1 612 aa17.71■□□□□ 0.42
USH1C-204ENST00000526313 CCDC84Q86UT8 332 aaPredicted RBP17.71■□□□□ 0.42
USH1C-204ENST00000526313 OR8K1Q8NGG5 319 aa17.71■□□□□ 0.42
USH1C-204ENST00000526313 NOC4LQ9BVI4 516 aaKnown RBP17.71■□□□□ 0.42
USH1C-204ENST00000526313 ZNF341Q9BYN7 854 aa17.71■□□□□ 0.42
USH1C-204ENST00000526313 DNM3Q9UQ16 869 aa17.71■□□□□ 0.42
USH1C-204ENST00000526313 NKRFO15226 690 aaKnown RBP eCLIP17.7■□□□□ 0.42
USH1C-204ENST00000526313 RRP9O43818 475 aaKnown RBP17.7■□□□□ 0.42
USH1C-204ENST00000526313 MTIF2P46199 727 aaKnown RBP17.7■□□□□ 0.42
USH1C-204ENST00000526313 GMPSP49915 693 aaPredicted RBP17.7■□□□□ 0.42
USH1C-204ENST00000526313 HSD17B4P51659 736 aa17.7■□□□□ 0.42
USH1C-204ENST00000526313 NCBP1Q09161 790 aaKnown RBP17.7■□□□□ 0.42
USH1C-204ENST00000526313 LRRC41Q15345 812 aa17.7■□□□□ 0.42
USH1C-204ENST00000526313 PRPF38AQ8NAV1 312 aaKnown RBP17.7■□□□□ 0.42
USH1C-204ENST00000526313 EEF2KMTQ96G04 330 aa17.7■□□□□ 0.42
USH1C-204ENST00000526313 HSD17B14Q9BPX1 270 aa17.7■□□□□ 0.42
USH1C-204ENST00000526313 EHMT1Q9H9B1 1298 aa17.7■□□□□ 0.42
USH1C-204ENST00000526313 LUC7L2Q9Y383 392 aaKnown RBP17.7■□□□□ 0.42
USH1C-204ENST00000526313 EML1O00423 815 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 SLU7O95391 586 aaKnown RBP17.69■□□□□ 0.42
USH1C-204ENST00000526313 SSBP05455 408 aaKnown RBP eCLIP17.69■□□□□ 0.42
USH1C-204ENST00000526313 PPP2R5CQ13362 524 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 ZC3H3Q8IXZ2 948 aaKnown RBP17.69■□□□□ 0.42
USH1C-204ENST00000526313 IQCDQ96DY2 449 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 ZNF215Q9UL58 517 aaPredicted RBP17.69■□□□□ 0.42
USH1C-204ENST00000526313 NPHP3-ACAD11A0A0J9YXS1 232 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 A0A1W2PQJ5 194 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 MEIS1O00470 390 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 GIT2Q14161 759 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 MEA1Q16626 185 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 VWA3BQ502W6 1294 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 CEP55Q53EZ4 464 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 MICALL2Q8IY33 904 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 ERO1AQ96HE7 468 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 TSG101Q99816 390 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 EIF2AK1Q9BQI3 630 aaKnown RBP17.69■□□□□ 0.42
USH1C-204ENST00000526313 FGFBP2Q9BYJ0 223 aa17.69■□□□□ 0.42
USH1C-204ENST00000526313 CNOT7Q9UIV1 285 aaKnown RBP17.69■□□□□ 0.42
USH1C-204ENST00000526313 SCAF8Q9UPN6 1271 aaKnown RBP17.69■□□□□ 0.42
USH1C-204ENST00000526313 FKBP3Q00688 224 aaKnown RBP17.68■□□□□ 0.42
USH1C-204ENST00000526313 MAN2A1Q16706 1144 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 WDR59Q6PJI9 974 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 B3GNT9Q6UX72 402 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 SAMD7Q7Z3H4 446 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 SCFD1Q8WVM8 642 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 SLF1Q9BQI6 1058 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 KCTD10Q9H3F6 313 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 TUFT1Q9NNX1 390 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 BCS1LQ9Y276 419 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 RABGAP1Q9Y3P9 1069 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 RPTORQ8N122 1335 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 EYA4O95677 639 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 MUTP22033 750 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 HERC4Q5GLZ8 1057 aaPredicted RBP17.68■□□□□ 0.42
USH1C-204ENST00000526313 CLEC4DQ8WXI8 215 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 WDR24Q96S15 920 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 FEZ1Q99689 392 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 NDST4Q9H3R1 872 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 HACL1Q9UJ83 578 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 SIK3Q9Y2K2 1263 aa17.68■□□□□ 0.42
USH1C-204ENST00000526313 KIF20AO95235 890 aa17.67■□□□□ 0.42
USH1C-204ENST00000526313 MARSP56192 900 aaKnown RBP17.67■□□□□ 0.42
USH1C-204ENST00000526313 FKBP15Q5T1M5 1219 aa17.67■□□□□ 0.42
USH1C-204ENST00000526313 AGBL1Q96MI9 1066 aa17.67■□□□□ 0.42
USH1C-204ENST00000526313 CEP63Q96MT8 703 aa17.67■□□□□ 0.42
USH1C-204ENST00000526313 CHP1Q99653 195 aa17.67■□□□□ 0.42
USH1C-204ENST00000526313 PDCL3Q9H2J4 239 aa17.67■□□□□ 0.42
USH1C-204ENST00000526313 ZNF112Q9UJU3 913 aa17.67■□□□□ 0.42
USH1C-204ENST00000526313 ASTN2O75129 1339 aaPredicted RBP17.67■□□□□ 0.42
USH1C-204ENST00000526313 PES1O00541 588 aaKnown RBP17.66■□□□□ 0.42
USH1C-204ENST00000526313 SLITRK3O94933 977 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 GNG11P61952 73 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 ZBED6P86452 979 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 PABPC4Q13310 644 aaKnown RBP eCLIP17.66■□□□□ 0.42
USH1C-204ENST00000526313 EPM2AIP1Q7L775 607 aaPredicted RBP17.66■□□□□ 0.42
USH1C-204ENST00000526313 SLC38A10Q9HBR0 1119 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 EMILIN3Q9NT22 766 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 CCPG1Q9ULG6 757 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 RBBP6Q7Z6E9 1792 aaKnown RBP17.66■□□□□ 0.42
USH1C-204ENST00000526313 CDK17Q00537 523 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 SETQ01105 290 aaPredicted RBP17.66■□□□□ 0.42
USH1C-204ENST00000526313 RASSF7Q02833 373 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 LRCH2Q5VUJ6 765 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 SAMD3Q8N6K7 520 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 AGPAT5Q9NUQ2 364 aa17.66■□□□□ 0.42
USH1C-204ENST00000526313 MAP3K20Q9NYL2 800 aaKnown RBP17.66■□□□□ 0.42
USH1C-204ENST00000526313 EPN1Q9Y6I3 576 aaPredicted RBP17.66■□□□□ 0.42
USH1C-204ENST00000526313 BCRP11274 1271 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 KLK7P49862 253 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 TBC1D10BQ4KMP7 808 aaPredicted RBP17.65■□□□□ 0.42
USH1C-204ENST00000526313 PPP4R3CPQ6ZMV5 832 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 REEP2Q9BRK0 252 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 RGL1Q9NZL6 768 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 PPP1R1BQ9UD71 204 aaPredicted RBP17.65■□□□□ 0.42
USH1C-204ENST00000526313 A0A0U1RQJ8 604 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 GNA14O95837 355 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 KRT18P05783 430 aaKnown RBP17.65■□□□□ 0.42
USH1C-204ENST00000526313 TRIM21P19474 475 aaKnown RBP17.65■□□□□ 0.42
USH1C-204ENST00000526313 CASQ1P31415 396 aa17.65■□□□□ 0.42
USH1C-204ENST00000526313 HNRNPH3P31942 346 aaKnown RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms