RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ASB2Q96Q27 587 aa11.64□□□□□ -0.55
VPS28-204ENST00000526054 KIF2CQ99661 725 aa11.64□□□□□ -0.55
VPS28-204ENST00000526054 LARP6Q9BRS8 491 aaKnown RBP11.64□□□□□ -0.55
VPS28-204ENST00000526054 KATNAL1Q9BW62 490 aa11.64□□□□□ -0.55
VPS28-204ENST00000526054 TSPYL2Q9H2G4 693 aaPredicted RBP11.64□□□□□ -0.55
VPS28-204ENST00000526054 TPCN1Q9ULQ1 816 aa11.64□□□□□ -0.55
VPS28-204ENST00000526054 hCG_1984214I3L0E3 225 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 TNFRSF10AO00220 468 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 ST18O60284 1047 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 PFKFB2O60825 505 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 EIF3JO75822 258 aaKnown RBP11.63□□□□□ -0.55
VPS28-204ENST00000526054 CDKL5O76039 1030 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 NR3C2P08235 984 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 ZNF286BP0CG31 522 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 IFNAR1P17181 557 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 KCNJ6P48051 423 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 HSD17B4P51659 736 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 MRPS5P82675 430 aaKnown RBP11.63□□□□□ -0.55
VPS28-204ENST00000526054 FUT2Q10981 343 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 LRRC8DQ7L1W4 858 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 HEATR3Q7Z4Q2 680 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 HERC6Q8IVU3 1022 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 TRIM22Q8IYM9 498 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 SAMD3Q8N6K7 520 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 ZNF713Q8N859 430 aaPredicted RBP11.63□□□□□ -0.55
VPS28-204ENST00000526054 C7orf31Q8N865 590 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 PPTC7Q8NI37 304 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 PHOSPHO2Q8TCD6 241 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 ADAMTS19Q8TE59 1207 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 KAT2BQ92831 832 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 EMID1Q96A84 441 aaPredicted RBP11.63□□□□□ -0.55
VPS28-204ENST00000526054 CTAGE1Q96RT6 745 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 RNF26Q9BY78 433 aaPredicted RBP11.63□□□□□ -0.55
VPS28-204ENST00000526054 NCOA5Q9HCD5 579 aaKnown RBP11.63□□□□□ -0.55
VPS28-204ENST00000526054 GTF2IRD1Q9UHL9 959 aa11.63□□□□□ -0.55
VPS28-204ENST00000526054 DDX41Q9UJV9 622 aaKnown RBP11.63□□□□□ -0.55
VPS28-204ENST00000526054 hCG_1642624A0A1W2PR95 340 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 KIF28PB7ZC32 967 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 RBAK-RBAKDNI3L0D1 243 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 OPLAHO14841 1288 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 PRPF3O43395 683 aaKnown RBP11.62□□□□□ -0.55
VPS28-204ENST00000526054 GTPBP6O43824 516 aaPredicted RBP11.62□□□□□ -0.55
VPS28-204ENST00000526054 F2P00734 622 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 MYCLP12524 364 aaPredicted RBP11.62□□□□□ -0.55
VPS28-204ENST00000526054 SELPP16109 830 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 PSEN2P49810 448 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 GHRHRQ02643 423 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 LAMC2Q13753 1193 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 MFSD10Q14728 455 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 PPP1R18Q6NYC8 613 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 DHX37Q8IY37 1157 aaKnown RBP11.62□□□□□ -0.55
VPS28-204ENST00000526054 DHX38Q92620 1227 aaKnown RBP11.62□□□□□ -0.55
VPS28-204ENST00000526054 PDCD2LQ9BRP1 358 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 ALG1Q9BT22 464 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 SLC26A6Q9BXS9 759 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 CERS4Q9HA82 394 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 MAP3K20Q9NYL2 800 aaKnown RBP11.62□□□□□ -0.55
VPS28-204ENST00000526054 HDAC6Q9UBN7 1215 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 LIMCH1Q9UPQ0 1083 aa11.62□□□□□ -0.55
VPS28-204ENST00000526054 V9GY48 417 aaPredicted RBP11.62□□□□□ -0.55
VPS28-204ENST00000526054 GCOM1H8Y6P7 765 aaPredicted RBP11.61□□□□□ -0.55
VPS28-204ENST00000526054 TLL1O43897 1013 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 PARNO95453 639 aaKnown RBP11.61□□□□□ -0.55
VPS28-204ENST00000526054 POLR2MP0CAP2 368 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 SCG2P13521 617 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 HOXA13P31271 388 aaPredicted RBP11.61□□□□□ -0.55
VPS28-204ENST00000526054 WDR5P61964 334 aaKnown RBP11.61□□□□□ -0.55
VPS28-204ENST00000526054 TAP1Q03518 808 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 SSRP1Q08945 709 aaKnown RBP11.61□□□□□ -0.55
VPS28-204ENST00000526054 RBL2Q08999 1139 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 SCRN1Q12765 414 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 PGM5Q15124 567 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 SKIV2LQ15477 1246 aaKnown RBP11.61□□□□□ -0.55
VPS28-204ENST00000526054 NTRK3Q16288 839 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 ME3Q16798 604 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 PFKFB3Q16875 520 aaPredicted RBP11.61□□□□□ -0.55
VPS28-204ENST00000526054 KIAA0753Q2KHM9 967 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 WWC2Q6AWC2 1192 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 CCDC12Q8WUD4 166 aaPredicted RBP11.61□□□□□ -0.55
VPS28-204ENST00000526054 ARNTL2Q8WYA1 636 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 GPKOWQ92917 476 aaPredicted RBP eCLIP11.61□□□□□ -0.55
VPS28-204ENST00000526054 CUL5Q93034 780 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 PHKBQ93100 1093 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 GTF3C6Q969F1 213 aa11.61□□□□□ -0.55
VPS28-204ENST00000526054 ZSCAN31Q96LW9 406 aaPredicted RBP11.61□□□□□ -0.55
VPS28-204ENST00000526054 PRRC2BQ5JSZ5 2229 aaKnown RBP11.6□□□□□ -0.55
VPS28-204ENST00000526054 EPOPA6NHQ4 379 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 RFXAPO00287 272 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 SORBS3O60504 671 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 RGS20O76081 388 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 ARHGEF15O94989 841 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 DEXIO95424 95 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 GGPS1O95749 300 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 CKBP12277 381 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 UBA1P22314 1058 aaKnown RBP11.6□□□□□ -0.55
VPS28-204ENST00000526054 MCM2P49736 904 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 NAPAP54920 295 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 CNKSR3Q6P9H4 555 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 KCNV1Q6PIU1 500 aa11.6□□□□□ -0.55
VPS28-204ENST00000526054 TEX2Q8IWB9 1127 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms