RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 HSCBQ8IWL3 235 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 DPF3Q92784 378 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 SDF4Q9BRK5 362 aa16.21■□□□□ 0.19
NUP54-216ENST00000514901 FOXP1Q9H334 677 aaPredicted RBP16.21■□□□□ 0.19
NUP54-216ENST00000514901 AGO4Q9HCK5 861 aaKnown RBP16.21■□□□□ 0.19
NUP54-216ENST00000514901 DNAH12Q6ZR08 3092 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 IGLV3-22A0A075B6J6 115 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 NOP56O00567 594 aaKnown RBP16.2■□□□□ 0.18
NUP54-216ENST00000514901 ATP9AO75110 1047 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 ARP10275 920 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 HOXD8P13378 290 aaPredicted RBP16.2■□□□□ 0.18
NUP54-216ENST00000514901 GCFC2P16383 781 aaKnown RBP16.2■□□□□ 0.18
NUP54-216ENST00000514901 PURAQ00577 322 aaKnown RBP16.2■□□□□ 0.18
NUP54-216ENST00000514901 GUCY1B3Q02153 619 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 NR5A1Q13285 461 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 SNX17Q15036 470 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 INF2Q27J81 1249 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 Q4G0T1 1027 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 PRR16Q569H4 304 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 TNFRSF25Q93038 417 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 TBC1D22BQ9NU19 505 aa16.2■□□□□ 0.18
NUP54-216ENST00000514901 A0A0U1RQG5 324 aaPredicted RBP16.19■□□□□ 0.18
NUP54-216ENST00000514901 IPO5O00410 1097 aaKnown RBP16.19■□□□□ 0.18
NUP54-216ENST00000514901 EDIL3O43854 480 aa16.19■□□□□ 0.18
NUP54-216ENST00000514901 ATN1P54259 1190 aaPredicted RBP16.19■□□□□ 0.18
NUP54-216ENST00000514901 GNL2Q13823 731 aaKnown RBP16.19■□□□□ 0.18
NUP54-216ENST00000514901 HSDL1Q3SXM5 330 aa16.19■□□□□ 0.18
NUP54-216ENST00000514901 PPP4R3AQ6IN85 833 aa16.19■□□□□ 0.18
NUP54-216ENST00000514901 MBOAT7Q96N66 472 aa16.19■□□□□ 0.18
NUP54-216ENST00000514901 ZNF577Q9BSK1 485 aa16.19■□□□□ 0.18
NUP54-216ENST00000514901 KATNAL1Q9BW62 490 aa16.19■□□□□ 0.18
NUP54-216ENST00000514901 JPH1Q9HDC5 661 aaPredicted RBP16.19■□□□□ 0.18
NUP54-216ENST00000514901 NR2E3Q9Y5X4 410 aa16.19■□□□□ 0.18
NUP54-216ENST00000514901 MROH7Q68CQ1 1323 aa16.19■□□□□ 0.18
NUP54-216ENST00000514901 H3BQV1 296 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 ARVCFO00192 962 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 EVI5O60447 810 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 PDCP20941 246 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 ITGA7Q13683 1181 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 LRRC26Q2I0M4 334 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 LETM2Q2VYF4 491 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 LARP1BQ659C4 914 aaKnown RBP16.18■□□□□ 0.18
NUP54-216ENST00000514901 SEPT1Q8WYJ6 367 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 LENG9Q96B70 501 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 TOX2Q96NM4 488 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 GPR20Q99678 358 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 SLC9A2Q9UBY0 812 aa16.18■□□□□ 0.18
NUP54-216ENST00000514901 CDK7P50613 346 aa16.17■□□□□ 0.18
NUP54-216ENST00000514901 RTP1P59025 263 aa16.17■□□□□ 0.18
NUP54-216ENST00000514901 SLC43A3Q8NBI5 491 aa16.17■□□□□ 0.18
NUP54-216ENST00000514901 RIT2Q99578 217 aa16.17■□□□□ 0.18
NUP54-216ENST00000514901 BCAS3Q9H6U6 928 aa16.17■□□□□ 0.18
NUP54-216ENST00000514901 PKD2L1Q9P0L9 805 aa16.17■□□□□ 0.18
NUP54-216ENST00000514901 DDX25Q9UHL0 483 aaKnown RBP16.17■□□□□ 0.18
NUP54-216ENST00000514901 TCEAL9Q9UHQ7 104 aa16.17■□□□□ 0.18
NUP54-216ENST00000514901 CEP290O15078 2479 aa16.16■□□□□ 0.18
NUP54-216ENST00000514901 MSH4O15457 936 aa16.16■□□□□ 0.18
NUP54-216ENST00000514901 SORBS3O60504 671 aa16.16■□□□□ 0.18
NUP54-216ENST00000514901 CCNT1O60563 726 aaKnown RBP16.16■□□□□ 0.18
NUP54-216ENST00000514901 TDP2O95551 362 aa16.16■□□□□ 0.18
NUP54-216ENST00000514901 U2AF2P26368 475 aaKnown RBP eCLIP16.16■□□□□ 0.185e-7■□□□□ 8.9
NUP54-216ENST00000514901 PTPN11Q06124 597 aaPredicted RBP16.16■□□□□ 0.18
NUP54-216ENST00000514901 ITGB3BPQ13352 177 aaPredicted RBP16.16■□□□□ 0.18
NUP54-216ENST00000514901 EARS2Q5JPH6 523 aaKnown RBP16.16■□□□□ 0.18
NUP54-216ENST00000514901 NFRKBQ6P4R8 1299 aa16.16■□□□□ 0.18
NUP54-216ENST00000514901 ANKRD33Q7Z3H0 272 aa16.16■□□□□ 0.18
NUP54-216ENST00000514901 NOSTRINQ8IVI9 506 aa16.16■□□□□ 0.18
NUP54-216ENST00000514901 FAM20AQ96MK3 541 aa16.16■□□□□ 0.18
NUP54-216ENST00000514901 SCN10AQ9Y5Y9 1956 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 DCDC2CA8MYV0 355 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 TBX3O15119 743 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 DHX15O43143 795 aaKnown RBP16.15■□□□□ 0.18
NUP54-216ENST00000514901 F2P00734 622 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 TRAPPC10P48553 1259 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 KRT76Q01546 638 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 SP4Q02446 784 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 ZNF746Q6NUN9 644 aaPredicted RBP16.15■□□□□ 0.18
NUP54-216ENST00000514901 KAT2BQ92831 832 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 SLC5A5Q92911 643 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 C16orf70Q9BSU1 422 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 ZNF215Q9UL58 517 aaPredicted RBP16.15■□□□□ 0.18
NUP54-216ENST00000514901 ATP11BQ9Y2G3 1177 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 GRIN2DO15399 1336 aa16.15■□□□□ 0.18
NUP54-216ENST00000514901 GSTTP1A0A1W2PQM5 241 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 H3BRB1 525 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 TLR3O15455 904 aaKnown RBP16.14■□□□□ 0.17
NUP54-216ENST00000514901 GAS7O60861 476 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 ATG7O95352 703 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 BAG4O95429 457 aaKnown RBP16.14■□□□□ 0.17
NUP54-216ENST00000514901 LGALS2P05162 132 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 HSP90AA1P07900 732 aaKnown RBP16.14■□□□□ 0.17
NUP54-216ENST00000514901 PDIA4P13667 645 aaKnown RBP16.14■□□□□ 0.17
NUP54-216ENST00000514901 TCF7P36402 384 aaPredicted RBP16.14■□□□□ 0.17
NUP54-216ENST00000514901 PSEN2P49810 448 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 ACTR2P61160 394 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 PSMC6P62333 389 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 TLE2Q04725 743 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 ORC2Q13416 577 aaPredicted RBP16.14■□□□□ 0.17
NUP54-216ENST00000514901 MFSD10Q14728 455 aa16.14■□□□□ 0.17
NUP54-216ENST00000514901 NBPF20Q3BBV1 942 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms