RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ALDH8A1Q9H2A2 487 aaPredicted RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 TDRD3Q9H7E2 651 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 COL4A3BPQ9Y5P4 624 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 USP17L5A8MUK1 530 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 ZBTB16Q05516 673 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 RPS6KA1Q15418 735 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 TXNRD1Q16881 649 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 SWT1Q5T5J6 900 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 FOXR1Q6PIV2 292 aa14.31□□□□□ -0.12
TCOF1-213ENST00000514442 RSRC2Q7L4I2 434 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 CNOT6LQ96LI5 555 aaKnown RBP14.31□□□□□ -0.12
TCOF1-213ENST00000514442 GH2P01242 217 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 MYO1EQ12965 1108 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 DBN1Q16643 649 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 TMTC3Q6ZXV5 915 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 GSDMAQ96QA5 445 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 NAP1L3Q99457 506 aaPredicted RBP14.3□□□□□ -0.12
TCOF1-213ENST00000514442 DLATP10515 647 aaKnown RBP14.3□□□□□ -0.12
TCOF1-213ENST00000514442 CDC27P30260 824 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 LIG4P49917 911 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 ODR4Q5SWX8 454 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 ENAHQ8N8S7 591 aaPredicted RBP14.3□□□□□ -0.12
TCOF1-213ENST00000514442 WHAMMQ8TF30 809 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 HVCN1Q96D96 273 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 EPN3Q9H201 632 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 CNOT10Q9H9A5 744 aaKnown RBP14.3□□□□□ -0.12
TCOF1-213ENST00000514442 KLHL14Q9P2G3 628 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 GSG1L2A8MUP6 293 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 RASSF2P50749 326 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 IGBP1P78318 339 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 SLC7A5Q01650 507 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 FAM133BQ5BKY9 247 aaKnown RBP14.3□□□□□ -0.12
TCOF1-213ENST00000514442 SEPT14Q6ZU15 432 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 DAAM2Q86T65 1068 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 ADGRB1O14514 1584 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 LAD1O00515 517 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 MAP7Q14244 749 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 CIAPIN1Q6FI81 312 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 P3H4Q92791 437 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 ARHGEF2Q92974 986 aaKnown RBP14.3□□□□□ -0.12
TCOF1-213ENST00000514442 TSNARE1Q96NA8 513 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 PNKPQ96T60 521 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 TMEM47Q9BQJ4 181 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 LY9Q9HBG7 655 aa14.3□□□□□ -0.12
TCOF1-213ENST00000514442 BUB1O43683 1085 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 ECE2O60344 883 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 SRGAP2O75044 1071 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 KRT26Q7Z3Y9 468 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 TBC1D1Q86TI0 1168 aaPredicted RBP14.29□□□□□ -0.12
TCOF1-213ENST00000514442 OXER1Q8TDS5 423 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 IRX2Q9BZI1 471 aaPredicted RBP14.29□□□□□ -0.12
TCOF1-213ENST00000514442 NRXN1Q9ULB1 1477 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 POLE2P56282 527 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 TRIM28Q13263 835 aaKnown RBP14.29□□□□□ -0.12
TCOF1-213ENST00000514442 EP400NLQ6ZTU2 488 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 STOX1Q6ZVD7 989 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 UBL4BQ8N7F7 174 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 PROCA1Q8NCQ7 364 aaPredicted RBP14.29□□□□□ -0.12
TCOF1-213ENST00000514442 KRT12Q99456 494 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 L1RE1Q9UN81 338 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 LRRIQ4A6NIV6 560 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 ZBTB7AO95365 584 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 NAIF1Q69YI7 327 aaPredicted RBP14.29□□□□□ -0.12
TCOF1-213ENST00000514442 DCUN1D2Q6PH85 259 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 PEX26Q7Z412 305 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 ZNF473Q8WTR7 871 aaKnown RBP14.29□□□□□ -0.12
TCOF1-213ENST00000514442 MRRFQ96E11 262 aaKnown RBP14.29□□□□□ -0.12
TCOF1-213ENST00000514442 VCX3BQ9H321 246 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 VCX3AQ9NNX9 186 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 LARSQ9P2J5 1176 aaKnown RBP14.29□□□□□ -0.12
TCOF1-213ENST00000514442 GMNCA6NCL1 334 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 STAT1P42224 750 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 DGKHQ86XP1 1220 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 KLHL29Q96CT2 875 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 SRPRBQ9Y5M8 271 aaKnown RBP14.29□□□□□ -0.12
TCOF1-213ENST00000514442 ABCC12Q96J65 1359 aa14.29□□□□□ -0.12
TCOF1-213ENST00000514442 LINC00116Q8NCU8 138 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 CEP63Q96MT8 703 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 TUBGCP2Q9BSJ2 902 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 DIP2BQ9P265 1576 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 SUN1O94901 812 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 PLCG1P19174 1290 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 POLGP54098 1239 aaPredicted RBP14.28□□□□□ -0.12
TCOF1-213ENST00000514442 SEPT2Q15019 361 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 RIN2Q8WYP3 895 aaPredicted RBP14.28□□□□□ -0.12
TCOF1-213ENST00000514442 SLC40A1Q9NP59 571 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.28□□□□□ -0.12
TCOF1-213ENST00000514442 ANKFY1Q9P2R3 1169 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 SPATA31A1Q5TZJ5 1347 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 RPS6KA5O75582 802 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 PRPF6O94906 941 aaKnown RBP14.28□□□□□ -0.12
TCOF1-213ENST00000514442 MTF1Q14872 753 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 PLCB4Q15147 1175 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 RASIP1Q5U651 963 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 HOMER3Q9NSC5 361 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 HAUS2Q9NVX0 235 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 CEP170BQ9Y4F5 1589 aaPredicted RBP14.28□□□□□ -0.12
TCOF1-213ENST00000514442 CIB2O75838 187 aa14.28□□□□□ -0.12
TCOF1-213ENST00000514442 ADRA2BP18089 450 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms