RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 PDE4DQ08499 809 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 SPIRE1Q08AE8 756 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 TMEM119Q4V9L6 283 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 NAALADL2Q58DX5 795 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 RAD54LQ92698 747 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 ERCC4Q92889 916 aaPredicted RBP17.92■□□□□ 0.46
NUP54-214ENST00000514307 HHIPL1Q96JK4 782 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 PNMA5Q96PV4 448 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 TXNRD2Q9NNW7 524 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 MAN1B1Q9UKM7 699 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 VAV3Q9UKW4 847 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 KIAA1024Q9UPX6 916 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 TLL2Q9Y6L7 1015 aa17.92■□□□□ 0.46
NUP54-214ENST00000514307 TMEM88BA6NKF7 163 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 RPN1P04843 607 aaKnown RBP17.91■□□□□ 0.46
NUP54-214ENST00000514307 MORC3Q14149 939 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 KCNB1Q14721 858 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 WDR78Q5VTH9 848 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 CATSPER3Q86XQ3 398 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 GRAMD1CQ8IYS0 662 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 ABRAQ8N0Z2 381 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 GIMAP8Q8ND71 665 aaPredicted RBP17.91■□□□□ 0.46
NUP54-214ENST00000514307 RDM1Q8NG50 284 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 IL31RAQ8NI17 732 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 LARP4BQ92615 738 aaKnown RBP17.91■□□□□ 0.46
NUP54-214ENST00000514307 GJA10Q969M2 543 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 INPP4AQ96PE3 977 aaPredicted RBP17.91■□□□□ 0.46
NUP54-214ENST00000514307 NACC1Q96RE7 527 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 UIMC1Q96RL1 719 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 EIF2AK1Q9BQI3 630 aaKnown RBP17.91■□□□□ 0.46
NUP54-214ENST00000514307 CBX8Q9HC52 389 aa17.91■□□□□ 0.46
NUP54-214ENST00000514307 PVALEFA0A1B0GWK0 134 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 SPATA31C2B4DYI2 1134 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 SFNP31947 248 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 HTRA3P83110 453 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 KRT76Q01546 638 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 SREBF2Q12772 1141 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 FSTL1Q12841 308 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 KCNV1Q6PIU1 500 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 MIER3Q7Z3K6 550 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 RASAL3Q86YV0 1011 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 FAM43AQ8N2R8 423 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 FAM133AQ8N9E0 248 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 STAMQ92783 540 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 HSD17B14Q9BPX1 270 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 ABT1Q9ULW3 272 aaKnown RBP17.9■□□□□ 0.46
NUP54-214ENST00000514307 IVNS1ABPQ9Y6Y0 642 aa17.9■□□□□ 0.46
NUP54-214ENST00000514307 ASB14A6NK59 587 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 DKC1O60832 514 aaKnown RBP eCLIP17.89■□□□□ 0.45
NUP54-214ENST00000514307 P4HBP07237 508 aaKnown RBP17.89■□□□□ 0.45
NUP54-214ENST00000514307 PRR29P0C7W0 189 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 TGFB3P10600 412 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 MAPK4P31152 587 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 ICAM3P32942 547 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 PPP1R2P41236 205 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 ALDH5A1P51649 535 aaPredicted RBP17.89■□□□□ 0.45
NUP54-214ENST00000514307 JAK3P52333 1124 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 CNTN2Q02246 1040 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 CUL4BQ13620 913 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 ISM2Q6H9L7 571 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 CNNM4Q6P4Q7 775 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 ANKRD13CQ8N6S4 541 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 ZFP91Q96JP5 570 aaPredicted RBP17.89■□□□□ 0.45
NUP54-214ENST00000514307 PURBQ96QR8 312 aaKnown RBP17.89■□□□□ 0.45
NUP54-214ENST00000514307 PTPN18Q99952 460 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 NUDT12Q9BQG2 462 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 BLZF1Q9H2G9 400 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 SLC5A4Q9NY91 659 aa17.89■□□□□ 0.45
NUP54-214ENST00000514307 SOWAHBA6NEL2 793 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 DHX15O43143 795 aaKnown RBP17.88■□□□□ 0.45
NUP54-214ENST00000514307 MED24O75448 989 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 SLITRK3O94933 977 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 SLC10A3P09131 477 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 PLA2G4BP0C869 781 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 SPATA31C1P0DKV0 1188 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 HSPA6P17066 643 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 ERCC5P28715 1186 aaPredicted RBP17.88■□□□□ 0.45
NUP54-214ENST00000514307 PSMD2Q13200 908 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 STIM1Q13586 685 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 DHX8Q14562 1220 aaKnown RBP17.88■□□□□ 0.45
NUP54-214ENST00000514307 MCM6Q14566 821 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 ZNF658Q5TYW1 1059 aaPredicted RBP17.88■□□□□ 0.45
NUP54-214ENST00000514307 ZNF746Q6NUN9 644 aaPredicted RBP17.88■□□□□ 0.45
NUP54-214ENST00000514307 TPH2Q8IWU9 490 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 REM2Q8IYK8 340 aaPredicted RBP17.88■□□□□ 0.45
NUP54-214ENST00000514307 MTRQ99707 1265 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 SENP7Q9BQF6 1050 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 UNC45AQ9H3U1 944 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 BLOC1S4Q9NUP1 217 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 SAMM50Q9Y512 469 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 CEP350Q5VT06 3117 aa17.88■□□□□ 0.45
NUP54-214ENST00000514307 DNAJC25-GNG10A0A024R161 153 aa17.87■□□□□ 0.45
NUP54-214ENST00000514307 EML1O00423 815 aa17.87■□□□□ 0.45
NUP54-214ENST00000514307 IKBKBO14920 756 aa17.87■□□□□ 0.45
NUP54-214ENST00000514307 IQCB1Q15051 598 aa17.87■□□□□ 0.45
NUP54-214ENST00000514307 FAM110CQ1W6H9 321 aa17.87■□□□□ 0.45
NUP54-214ENST00000514307 DPCR1Q3MIW9 517 aa17.87■□□□□ 0.45
NUP54-214ENST00000514307 B3GNT9Q6UX72 402 aa17.87■□□□□ 0.45
NUP54-214ENST00000514307 SYT2Q8N9I0 419 aaPredicted RBP17.87■□□□□ 0.45
NUP54-214ENST00000514307 TRIM9Q9C026 710 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms