RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 DDX25Q9UHL0 483 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 ABCA3Q99758 1704 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 SERPING1P05155 500 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 COBLL1Q53SF7 1204 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 DPP8Q6V1X1 898 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 RNF10Q8N5U6 811 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 FAM107BQ9H098 131 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 GRIN2DO15399 1336 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 IRS2Q9Y4H2 1338 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 DOT1LQ8TEK3 1739 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 RPS6KA4O75676 772 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 GUCY1A3Q02108 690 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 ALS2CLQ60I27 953 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 ZNF572Q7Z3I7 529 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 SH3GL2Q99962 352 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 CEP72Q9P209 647 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 LEMD3Q9Y2U8 911 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 ATP6V0A2Q9Y487 856 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 A0A087WUV0 522 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 KCNK3O14649 394 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 PDIA5Q14554 519 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 EFCAB13Q8IY85 973 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 RTCBQ9Y3I0 505 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 ROBO3Q96MS0 1386 aa10.19□□□□□ -0.78
LIMCH1-215ENST00000512632 GPR75-ASB3A0A0A6YYF3 556 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 POTEB3A0JP26 581 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 POTECB2RU33 542 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L15C9J2P7 530 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L13C9JLJ4 530 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L11C9JVI0 530 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L18D6R9N7 530 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L22D6RA61 530 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L17D6RBQ6 530 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L19D6RCP7 530 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L20D6RJB6 530 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 STAT3P40763 770 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 RHBDL3P58872 404 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 GPSM2P81274 684 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L24Q0WX57 530 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 ADAM9Q13443 819 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L6PQ6QN14 398 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 POTEBQ6S5H4 581 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 MAATS1Q7Z4T9 603 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 CASKIN2Q8WXE0 1202 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 MTMR4Q9NYA4 1195 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 ESYT2A0FGR8 921 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 ZNF233A6NK53 670 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 PPP1R11O60927 126 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 SLC9A1P19634 815 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 GRAPQ13588 217 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 KCTD1Q719H9 257 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 GPBP1Q86WP2 473 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 DDX42Q86XP3 938 aaKnown RBP eCLIP10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 IQCKQ8N0W5 287 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 GRAPLQ8TC17 118 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 RNPC3Q96LT9 517 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 JMJD4Q9H9V9 463 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 SNED1Q8TER0 1413 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 PAK2Q13177 524 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 PSMD2Q13200 908 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 NAB2Q15742 525 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 SLC18A3Q16572 532 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 ZCWPW2Q504Y3 356 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 LUC7LQ9NQ29 371 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 THRAP3Q9Y2W1 955 aaKnown RBP10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 RAD51CO43502 376 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 PLA2G4BP0C869 781 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 HPDP32754 393 aaPredicted RBP10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 SEC24CP53992 1094 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 ADGRF4Q8IZF3 695 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 TAF4BQ92750 862 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 CAVIN3Q969G5 261 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 SPAG5Q96R06 1193 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 EFCC1Q9HA90 598 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 EMILIN3Q9NT22 766 aa10.18□□□□□ -0.78
LIMCH1-215ENST00000512632 USP17L10C9JJH3 530 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 MEIS1O00470 390 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 MPHOSPH10O00566 681 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 CEP104O60308 925 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 ERLIN2O94905 339 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 KCNH2Q12809 1159 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 ASIC2Q16515 512 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 TMEM119Q4V9L6 283 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 TCERG1LQ5VWI1 586 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 FBXW10Q5XX13 1052 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 GBP6Q6ZN66 633 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 TRIM59Q8IWR1 403 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 SCFD1Q8WVM8 642 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 AP1M1Q9BXS5 423 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 EDEM3Q9BZQ6 932 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 C6orf229H3BNL8 230 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 CCDC65Q8IXS2 484 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 OR2W6PQ8NHA6 318 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 LRRC27Q9C0I9 530 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 ABCB11O95342 1321 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 GRID2IPA4D2P6 1211 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 TMCO5BA8MYB1 307 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 RFC4P35249 363 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 PTK2Q05397 1052 aa10.17□□□□□ -0.78
LIMCH1-215ENST00000512632 RPS6KA1Q15418 735 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms