RNA–Protein interactions for RNA: ENST00000497440.5

SHROOM3-210, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 611 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-210ENST00000497440 GDF6Q6KF10 455 aaPredicted RBP12.5□□□□□ -0.41
SHROOM3-210ENST00000497440 TRAF7Q6Q0C0 670 aa12.5□□□□□ -0.41
SHROOM3-210ENST00000497440 NIPA1Q7RTP0 329 aa12.5□□□□□ -0.41
SHROOM3-210ENST00000497440 HERVK_113Q902F9 699 aa12.5□□□□□ -0.41
SHROOM3-210ENST00000497440 MXRA8Q9BRK3 442 aa12.5□□□□□ -0.41
SHROOM3-210ENST00000497440 RTEL1Q9NZ71 1219 aa12.5□□□□□ -0.41
SHROOM3-210ENST00000497440 HDAC6Q9UBN7 1215 aa12.5□□□□□ -0.41
SHROOM3-210ENST00000497440 TRIP12Q14669 1992 aaPredicted RBP12.5□□□□□ -0.41
SHROOM3-210ENST00000497440 IGLV3-22A0A075B6J6 115 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 GSTTP1A0A1W2PQM5 241 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 SPDYE3A6NKU9 549 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 H3BRB1 525 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 M0R2N6 131 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 ATG7O95352 703 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 SEC24BO95487 1268 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 IQCF3P0C7M6 154 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 CYP2C9P11712 490 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 NAPAP54920 295 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 KIAA0753Q2KHM9 967 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 CEP55Q53EZ4 464 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 MCTP2Q6DN12 878 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 ZNF365Q70YC5 407 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 CYFIP1Q7L576 1253 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 NLRX1Q86UT6 975 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 CYP2W1Q8TAV3 490 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 CAGE1Q8TC20 777 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 DHX38Q92620 1227 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 KATNAL1Q9BW62 490 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 UPF3BQ9BZI7 483 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 PPP1R12CQ9BZL4 782 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 TUT1Q9H6E5 874 aaKnown RBP12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 MLXIPQ9HAP2 919 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 SH3GLB2Q9NR46 395 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 KCNH7Q9NS40 1196 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 MTMR10Q9NXD2 777 aa12.49□□□□□ -0.41
SHROOM3-210ENST00000497440 NFASCO94856 1347 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 DHX15O43143 795 aaKnown RBP12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 EIF5BO60841 1220 aaKnown RBP12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 LGR5O75473 907 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 CXCL10P02778 98 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 LGALS2P05162 132 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 PFKMP08237 780 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 CIITAP33076 1130 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 RFC2P35250 354 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 FGD1P98174 961 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 MFSD10Q14728 455 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 NPY5RQ15761 445 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 PSRC1Q6PGN9 363 aaPredicted RBP12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 RPAINQ86UA6 219 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 SERINC5Q86VE9 423 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 PHKBQ93100 1093 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 ANO3Q9BYT9 981 aa12.48□□□□□ -0.41
SHROOM3-210ENST00000497440 DOCK5Q9H7D0 1870 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 TMEM265A0A087WTH1 108 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 IGKV6D-21A0A0A0MT36 114 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 PFKFB2O60825 505 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 ZNF286BP0CG31 522 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 ADCY7P51828 1080 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 PTK7Q13308 1070 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 MKRN4PQ13434 485 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 MTMR1Q13613 665 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 PTGISQ16647 500 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 RPUSD2Q8IZ73 545 aaKnown RBP12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 AFAP1L1Q8TED9 768 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 CCDC12Q8WUD4 166 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 PPP1R13LQ8WUF5 828 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 WNT8BQ93098 351 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 PCYT2Q99447 389 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 RNPEPQ9H4A4 650 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 NCOA5Q9HCD5 579 aaKnown RBP12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 PDRG1Q9NUG6 133 aa12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 CXXC1Q9P0U4 656 aaPredicted RBP12.47□□□□□ -0.41
SHROOM3-210ENST00000497440 MYO9BQ13459 2157 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 MUC3AQ02505 3323 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 REV3LO60673 3130 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 FAM86B1E9PN63 330 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 PARNO95453 639 aaKnown RBP12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 FGBP02675 491 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 FAM86B2P0C5J1 330 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 ARP10275 920 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 GNA11P29992 359 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 CCL23P55773 120 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 CCT2P78371 535 aaKnown RBP12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 ARHGAP4P98171 946 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 ITGB3BPQ13352 177 aaPredicted RBP12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 BFSP2Q13515 415 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 C7orf31Q8N865 590 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 SEPT1Q8WYJ6 367 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 LENG9Q96B70 501 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 SCLYQ96I15 445 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 RNPC3Q96LT9 517 aaKnown RBP12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 TTYH1Q9H313 450 aaPredicted RBP12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 EHMT1Q9H9B1 1298 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 AGO4Q9HCK5 861 aaKnown RBP12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 TMEM260Q9NX78 707 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 TPCN1Q9ULQ1 816 aa12.46□□□□□ -0.41
SHROOM3-210ENST00000497440 XIRP2A4UGR9 3374 aa12.46□□□□□ -0.42
SHROOM3-210ENST00000497440 SCN5AQ14524 2016 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms