RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 TINF2Q9BSI4 451 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 MMTAG2Q9BU76 263 aaKnown RBP12.84□□□□□ -0.35
MCF2L-231ENST00000494043 CCSER1Q9C0I3 900 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 VTA1Q9NP79 307 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 DDX19AQ9NUU7 478 aaKnown RBP12.84□□□□□ -0.35
MCF2L-231ENST00000494043 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.84□□□□□ -0.35
MCF2L-231ENST00000494043 DACT1Q9NYF0 836 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 MGAMO43451 1857 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 NFASCO94856 1347 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 A0A087X0B3 334 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 GPR25O00155 361 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 CYP2B6P20813 491 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 MAP2K1Q02750 393 aaPredicted RBP12.83□□□□□ -0.36
MCF2L-231ENST00000494043 OLFML2BQ68BL8 750 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 KCNV1Q6PIU1 500 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 EEPD1Q7L9B9 569 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 SNX29Q8TEQ0 813 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 SDF4Q9BRK5 362 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 UNC45AQ9H3U1 944 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 STK24Q9Y6E0 443 aa12.83□□□□□ -0.36
MCF2L-231ENST00000494043 DDX39AO00148 427 aaKnown RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 POLR2DO15514 142 aaKnown RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 SLC26A4O43511 780 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 CHMP2AO43633 222 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 KINO60870 393 aaKnown RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 ZNF202O95125 648 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 SNAI1O95863 264 aaPredicted RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 TGFB3P10600 412 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 XRCC5P13010 732 aaKnown RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 UBA1P22314 1058 aaKnown RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 CAP1Q01518 475 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 KRT76Q01546 638 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 SP2Q02086 613 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 KARSQ15046 597 aaKnown RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 KRT79Q5XKE5 535 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 HAUS3Q68CZ6 603 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 CAVIN1Q6NZI2 390 aaKnown RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 ERMNQ8TAM6 284 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 CD99L2Q8TCZ2 262 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 SCFD2Q8WU76 684 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 SYAP1Q96A49 352 aaPredicted RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 SENP7Q9BQF6 1050 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 PYM1Q9BRP8 204 aaKnown RBP12.82□□□□□ -0.36
MCF2L-231ENST00000494043 KATNBL1Q9H079 304 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 DISC1Q9NRI5 854 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 FLRT1Q9NZU1 646 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 CCDC39Q9UFE4 941 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 TCEAL9Q9UHQ7 104 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 KDM3AQ9Y4C1 1321 aa12.82□□□□□ -0.36
MCF2L-231ENST00000494043 RBM47A0AV96 593 aaKnown RBP12.81□□□□□ -0.36
MCF2L-231ENST00000494043 EML1O00423 815 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 FKTNO75072 461 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 ARIH2O95376 493 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 IGHA2P01877 340 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 CCT6AP40227 531 aaKnown RBP12.81□□□□□ -0.36
MCF2L-231ENST00000494043 JAK3P52333 1124 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 PRKCZQ05513 592 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 GRB10Q13322 594 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 IRF5Q13568 498 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 E2F4Q16254 413 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 CCL14Q16627 93 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 HYIQ5T013 277 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 CCDC183Q5T5S1 534 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 ZNF746Q6NUN9 644 aaPredicted RBP12.81□□□□□ -0.36
MCF2L-231ENST00000494043 TAPT1Q6NXT6 567 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 CCDC62Q6P9F0 684 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 PDILTQ8N807 584 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 IQUBQ8NA54 791 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 GIMAP8Q8ND71 665 aaPredicted RBP12.81□□□□□ -0.36
MCF2L-231ENST00000494043 RASSF8Q8NHQ8 419 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 DHX58Q96C10 678 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 CALML4Q96GE6 196 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 ERO1AQ96HE7 468 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 TIGD1Q96MW7 591 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 PNMA5Q96PV4 448 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 BEGAINQ9BUH8 593 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 PANK2Q9BZ23 570 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 ABHD16BQ9H3Z7 469 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 CLSTN2Q9H4D0 955 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 JPH1Q9HDC5 661 aaPredicted RBP12.81□□□□□ -0.36
MCF2L-231ENST00000494043 PDGFCQ9NRA1 345 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 TMEM63CQ9P1W3 806 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 GABRQQ9UN88 632 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 KIAA1217Q5T5P2 1943 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 MCM3APO60318 1980 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 DOCK3Q8IZD9 2030 aa12.81□□□□□ -0.36
MCF2L-231ENST00000494043 WDR64B1ANS9 1081 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 ACTN4O43707 911 aaKnown RBP12.8□□□□□ -0.36
MCF2L-231ENST00000494043 CCNE2O96020 404 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 GNRH1P01148 92 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 PLCG1P19174 1290 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 RPA1P27694 616 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 SFNP31947 248 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 STAT6P42226 847 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 FLT3LGP49771 235 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 ACVR2BQ13705 512 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 NEDD9Q14511 834 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 TTLL4Q14679 1199 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 EPHA7Q15375 998 aa12.8□□□□□ -0.36
MCF2L-231ENST00000494043 ZRSR1Q15695 479 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms