RNA–Protein interactions for RNA: ENST00000494028.1

CLCN6-208, Transcript of chloride voltage-gated channel 6, humanhuman

TSL 5

Gene CLCN6, Length 773 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-208ENST00000494028 PANX2Q96RD6 677 aa11.87□□□□□ -0.51
CLCN6-208ENST00000494028 BAG1Q99933 345 aaPredicted RBP11.87□□□□□ -0.51
CLCN6-208ENST00000494028 POLR3CQ9BUI4 534 aaPredicted RBP11.87□□□□□ -0.51
CLCN6-208ENST00000494028 SRRTQ9BXP5 876 aaKnown RBP11.87□□□□□ -0.51
CLCN6-208ENST00000494028 VPS16Q9H269 839 aa11.87□□□□□ -0.51
CLCN6-208ENST00000494028 AS3MTQ9HBK9 375 aa11.87□□□□□ -0.51
CLCN6-208ENST00000494028 NPHP3-ACAD11A0A0J9YXS1 232 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 A0A1W2PQC6 194 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 FLOT1O75955 427 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 PTPRAP18433 802 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 FXR1P51114 621 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLCN6-208ENST00000494028 HIRAP54198 1017 aaPredicted RBP11.86□□□□□ -0.51
CLCN6-208ENST00000494028 CACNB1Q02641 598 aaPredicted RBP11.86□□□□□ -0.51
CLCN6-208ENST00000494028 LRRC63Q05C16 580 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 RBL2Q08999 1139 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 PSMD2Q13200 908 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 CEP55Q53EZ4 464 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 MUM1L1Q5H9M0 696 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 LRCH2Q5VUJ6 765 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 B3GNT9Q6UX72 402 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 FAM114A1Q8IWE2 563 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 CCDC65Q8IXS2 484 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 REPS2Q8NFH8 660 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 ZNF507Q8TCN5 953 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 ATG4CQ96DT6 458 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 EIF2AK1Q9BQI3 630 aaKnown RBP11.86□□□□□ -0.51
CLCN6-208ENST00000494028 RAVER2Q9HCJ3 691 aaKnown RBP11.86□□□□□ -0.51
CLCN6-208ENST00000494028 TUFT1Q9NNX1 390 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 PANK4Q9NVE7 773 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 TRMT1Q9NXH9 659 aaKnown RBP11.86□□□□□ -0.51
CLCN6-208ENST00000494028 MAGEC2Q9UBF1 373 aaPredicted RBP11.86□□□□□ -0.51
CLCN6-208ENST00000494028 FZD1Q9UP38 647 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 RABGAP1Q9Y3P9 1069 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 PCDHA2Q9Y5H9 948 aa11.86□□□□□ -0.51
CLCN6-208ENST00000494028 B4DLN1 442 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 MEIS1O00470 390 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 STX10O60499 249 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 ALAS1P13196 640 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 EPS15P42566 896 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 BACE1P56817 501 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 PSMC6P62333 389 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 CYP4A11Q02928 519 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 SPP2Q13103 211 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 PABPC4Q13310 644 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLCN6-208ENST00000494028 ARSHQ5FYA8 562 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 MIIPQ5JXC2 388 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 PRAMEF18Q5VWM3 479 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 NIPA1Q7RTP0 329 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 PPFIBP1Q86W92 1011 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 CNGA4Q8IV77 575 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 MB21D1Q8N884 522 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 SYT2Q8N9I0 419 aaPredicted RBP11.85□□□□□ -0.51
CLCN6-208ENST00000494028 ZNF280CQ8ND82 737 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 SYTL5Q8TDW5 730 aaPredicted RBP11.85□□□□□ -0.51
CLCN6-208ENST00000494028 ZKSCAN4Q969J2 545 aaPredicted RBP11.85□□□□□ -0.51
CLCN6-208ENST00000494028 CCDC51Q96ER9 411 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 WNK4Q96J92 1243 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 UNC45AQ9H3U1 944 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 PICK1Q9NRD5 415 aa11.85□□□□□ -0.51
CLCN6-208ENST00000494028 KIF2AO00139 706 aaPredicted RBP11.84□□□□□ -0.51
CLCN6-208ENST00000494028 RIOK3O14730 519 aaKnown RBP11.84□□□□□ -0.51
CLCN6-208ENST00000494028 NKRFO15226 690 aaKnown RBP eCLIP11.84□□□□□ -0.51
CLCN6-208ENST00000494028 CCP110O43303 1012 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 GAS7O60861 476 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 EYA4O95677 639 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 ARP10275 920 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 BCRP11274 1271 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 CASP14P31944 242 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 GTF2F1P35269 517 aaKnown RBP eCLIP11.84□□□□□ -0.51
CLCN6-208ENST00000494028 LRRC41Q15345 812 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 PTPN14Q15678 1187 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 ARHGAP27Q6ZUM4 889 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 TOGARAM2Q6ZUX3 1019 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 OTOP1Q7RTM1 612 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 MCF2L2Q86YR7 1114 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 REXO1L1PQ8IX06 675 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 ZC3H3Q8IXZ2 948 aaKnown RBP11.84□□□□□ -0.51
CLCN6-208ENST00000494028 MYOCDQ8IZQ8 938 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 CPXCR1Q8N123 301 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.84□□□□□ -0.51
CLCN6-208ENST00000494028 KLRG1Q96E93 195 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 DYDC2Q96IM9 177 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 ZFP91Q96JP5 570 aaPredicted RBP11.84□□□□□ -0.51
CLCN6-208ENST00000494028 REEP2Q9BRK0 252 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 MXRA8Q9BRK3 442 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 TUBGCP2Q9BSJ2 902 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 RUSC1Q9BVN2 902 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 TEKT3Q9BXF9 490 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 WDR11Q9BZH6 1224 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 TTYH3Q9C0H2 523 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 ABHD10Q9NUJ1 306 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 PNMA2Q9UL42 364 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.84□□□□□ -0.51
CLCN6-208ENST00000494028 UBIAD1Q9Y5Z9 338 aa11.84□□□□□ -0.51
CLCN6-208ENST00000494028 SCN4AP35499 1836 aa11.83□□□□□ -0.51
CLCN6-208ENST00000494028 ZMYM2Q9UBW7 1377 aa11.83□□□□□ -0.52
CLCN6-208ENST00000494028 SOWAHDA6NJG2 315 aa11.83□□□□□ -0.52
CLCN6-208ENST00000494028 VWA5AO00534 786 aa11.83□□□□□ -0.52
CLCN6-208ENST00000494028 CHMP2AO43633 222 aa11.83□□□□□ -0.52
CLCN6-208ENST00000494028 FDX1P10109 184 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms