RNA–Protein interactions for RNA: ENST00000491433.1

CLCNKA-206, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 3

Gene CLCNKA, Length 824 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-206ENST00000491433 CHAMP1Q96JM3 812 aa13.05□□□□□ -0.32
CLCNKA-206ENST00000491433 SEC62Q99442 399 aaKnown RBP13.05□□□□□ -0.32
CLCNKA-206ENST00000491433 CLDND1Q9NY35 253 aa13.05□□□□□ -0.32
CLCNKA-206ENST00000491433 DLL3Q9NYJ7 618 aa13.05□□□□□ -0.32
CLCNKA-206ENST00000491433 CEP250Q9BV73 2442 aa13.05□□□□□ -0.32
CLCNKA-206ENST00000491433 ABCB11O95342 1321 aa13.05□□□□□ -0.32
CLCNKA-206ENST00000491433 FLNBO75369 2602 aaKnown RBP13.05□□□□□ -0.32
CLCNKA-206ENST00000491433 STXBP3O00186 592 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 HAS3O00219 553 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 CAND2O75155 1236 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 PPFIA4O75335 1185 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 RB1P06400 928 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 ZNF543Q08ER8 600 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 TRIM71Q2Q1W2 868 aaKnown RBP13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 PLEKHG4Q58EX7 1191 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 TCEAL5Q5H9L2 206 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 FBXO11Q86XK2 927 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 KIAA2013Q8IYS2 634 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 APBB2Q92870 758 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 TOP1MTQ969P6 601 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 DCTPP1Q9H773 170 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 DDX41Q9UJV9 622 aaKnown RBP13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 SPTBN2O15020 2390 aa13.04□□□□□ -0.32
CLCNKA-206ENST00000491433 EIF3JO75822 258 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 PCP11498 1178 aaKnown RBP13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 HOXB3P14651 431 aaPredicted RBP13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 THPOP40225 353 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 NT5C2P49902 561 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 ALX1Q15699 326 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 TCTN1Q2MV58 587 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 USH1GQ495M9 461 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 ARHGEF16Q5VV41 709 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 TRAF7Q6Q0C0 670 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 RPAINQ86UA6 219 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 ASIC4Q96FT7 647 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 RMDN3Q96TC7 470 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 MRVI1Q9Y6F6 885 aa13.03□□□□□ -0.32
CLCNKA-206ENST00000491433 MYH6P13533 1939 aa13.02□□□□□ -0.32
CLCNKA-206ENST00000491433 SNHG28P0DPA3 235 aa13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 HOXD8P13378 290 aaPredicted RBP13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 MKRN4PQ13434 485 aaPredicted RBP13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 MBTPS1Q14703 1052 aa13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 CCDC178Q5BJE1 867 aa13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 RRP12Q5JTH9 1297 aaKnown RBP13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 SERINC5Q86VE9 423 aa13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 SYTL5Q8TDW5 730 aaPredicted RBP13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 PPP2R3CQ969Q6 453 aa13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 TAAR1Q96RJ0 339 aa13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 C11orf84Q9BUA3 381 aaPredicted RBP13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 INCENPQ9NQS7 918 aa13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 MRPL11Q9Y3B7 192 aaKnown RBP13.02□□□□□ -0.33
CLCNKA-206ENST00000491433 C17orf102A2RUQ5 167 aa13.01□□□□□ -0.33
CLCNKA-206ENST00000491433 C5orf67F2Z3F1 127 aa13.01□□□□□ -0.33
CLCNKA-206ENST00000491433 ZNF286BP0CG31 522 aa13.01□□□□□ -0.33
CLCNKA-206ENST00000491433 GNAT1P11488 350 aa13.01□□□□□ -0.33
CLCNKA-206ENST00000491433 SMAD4Q13485 552 aaKnown RBP13.01□□□□□ -0.33
CLCNKA-206ENST00000491433 TSHZ3Q63HK5 1081 aa13.01□□□□□ -0.33
CLCNKA-206ENST00000491433 FIBCD1Q8N539 461 aa13.01□□□□□ -0.33
CLCNKA-206ENST00000491433 HELLSQ9NRZ9 838 aa13.01□□□□□ -0.33
CLCNKA-206ENST00000491433 MAP3K20Q9NYL2 800 aaKnown RBP13.01□□□□□ -0.33
CLCNKA-206ENST00000491433 MAST4O15021 2626 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 ZMYM6O95789 1325 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 MBTPS2O43462 519 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 UPP2O95045 317 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 NR3C2P08235 984 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 TGFB3P10600 412 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 HSPD1P10809 573 aaKnown RBP13□□□□□ -0.33
CLCNKA-206ENST00000491433 CTNNB1P35222 781 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 CDC37Q16543 378 aaPredicted RBP13□□□□□ -0.33
CLCNKA-206ENST00000491433 CTC1Q2NKJ3 1217 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 TICAM2Q86XR7 235 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 SAMD3Q8N6K7 520 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 KCNG4Q8TDN1 519 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 ATP6V0A1Q93050 837 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 IL17RAQ96F46 866 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 SPATA33Q96N06 139 aa13□□□□□ -0.33
CLCNKA-206ENST00000491433 IFIH1Q9BYX4 1025 aaKnown RBP13□□□□□ -0.33
CLCNKA-206ENST00000491433 RNF41Q9H4P4 317 aaPredicted RBP13□□□□□ -0.33
CLCNKA-206ENST00000491433 BMPR1AP36894 532 aa12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 ZNF200P98182 395 aaPredicted RBP12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 MYSM1Q5VVJ2 828 aa12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 MFSD6Q6ZSS7 791 aa12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 DGKHQ86XP1 1220 aa12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 PI4K2BQ8TCG2 481 aa12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 WNT8BQ93098 351 aa12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 PXMP2Q9NR77 195 aa12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 CD207Q9UJ71 328 aa12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 RCAN3Q9UKA8 241 aa12.99□□□□□ -0.33
CLCNKA-206ENST00000491433 CCDC171Q6TFL3 1326 aa12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 FOXP2O15409 715 aa12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 FGAP02671 866 aa12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 EIF2AK2P19525 551 aaKnown RBP12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 LTBRP36941 435 aa12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 CLUL1Q15846 466 aa12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 ASPRV1Q53RT3 343 aa12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 CELF3Q5SZQ8 465 aaKnown RBP12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 KIAA0319Q5VV43 1072 aa12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 ESR2Q92731 530 aa12.98□□□□□ -0.33
CLCNKA-206ENST00000491433 EVI5LQ96CN4 794 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms