RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 MAP3K5Q99683 1374 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 HLA-DPA1P20036 260 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 PTPREP23469 700 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CHMLP26374 656 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CSGALNACT2Q8N6G5 542 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 MAGEB6Q8N7X4 407 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 CCT7Q99832 543 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 SYTL2Q9HCH5 934 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 EPB41L5Q9HCM4 733 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 ABCF3Q9NUQ8 709 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 NLRP1Q9C000 1473 aa7.82□□□□□ -1.16
SYNE1-228ENST00000490135 NBPF26B4DH59 902 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 ZNF263O14978 683 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 IL15P40933 162 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 KCNV1Q6PIU1 500 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 OTUD6AQ7L8S5 288 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 CHST3Q7LGC8 479 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 DZIP3Q86Y13 1208 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 NBPF15Q8N660 670 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 CNBD1Q8NA66 436 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 VPS16Q9H269 839 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 DNM3Q9UQ16 869 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 POTEB3A0JP26 581 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 STK25O00506 426 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 CAPN1P07384 714 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 ACADSP16219 412 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 ADCY8P40145 1251 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 KLHL30Q0D2K2 578 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 C16orf72Q14CZ0 275 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 POTEBQ6S5H4 581 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 KDM7AQ6ZMT4 941 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 ANKRD13DQ6ZTN6 518 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 PATL1Q86TB9 770 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 ZBTB8OSQ8IWT0 167 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 SH2D3CQ8N5H7 860 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 GIPC2Q8TF65 315 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 MMS19Q96T76 1030 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 ADPGKQ9BRR6 497 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 MTA3Q9BTC8 594 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 TRIM45Q9H8W5 580 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 RPRD2Q5VT52 1461 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 CTTNBP2Q8WZ74 1663 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 AP5Z1O43299 807 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 GCNT3O95395 438 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 GLE1Q53GS7 698 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 NCCRP1Q6ZVX7 275 aaPredicted RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 MIGA1Q8NAN2 632 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 GLG1Q92896 1179 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 IFT122Q9HBG6 1241 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 DBNLQ9UJU6 430 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 WBP4O75554 376 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 GHRP10912 638 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 CPA1P15085 419 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 FLT3P36888 993 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 HSPA9P38646 679 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 KPNA2P52292 529 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 LMNB2Q03252 620 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 KPNB1Q14974 876 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 PPP1R15BQ5SWA1 713 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 SFMBT2Q5VUG0 894 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 GALNT17Q6IS24 598 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 YTHDF3Q7Z739 585 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 SCYL3Q8IZE3 742 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 METTL13Q8N6R0 699 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 CDC26Q8NHZ8 85 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 NMD3Q96D46 503 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 MAML3Q96JK9 1138 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 TYW1Q9NV66 732 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 AMFRQ9UKV5 643 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 SYNRGQ9UMZ2 1314 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 A6NJR5 290 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 MAP2K7O14733 419 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 VHLP40337 213 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 SEC24CP53992 1094 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 RBL2Q08999 1139 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 ARHGEF6Q15052 776 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 TMEM259Q4ZIN3 620 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 RSRC2Q7L4I2 434 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 TRIML2Q8N7C3 387 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 ARHGEF1Q92888 912 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 TATDN2Q93075 761 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 USP28Q96RU2 1077 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 HAUS4Q9H6D7 363 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 MRPL44Q9H9J2 332 aaKnown RBP7.81□□□□□ -1.16
SYNE1-228ENST00000490135 PAG1Q9NWQ8 432 aa7.81□□□□□ -1.16
SYNE1-228ENST00000490135 MBD4O95243 580 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 KRT8P05787 483 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 CCDC166P0CW27 439 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 MAGEA1P43355 309 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 CWF19L2Q2TBE0 894 aaKnown RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 LRRC8BQ6P9F7 803 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 RNF207Q6ZRF8 634 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 NLRX1Q86UT6 975 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 ABI1Q8IZP0 508 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 OMA1Q96E52 524 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 SAP30BPQ9UHR5 308 aaKnown RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 PHF8Q9UPP1 1060 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 RTCBQ9Y3I0 505 aaKnown RBP7.8□□□□□ -1.16
SYNE1-228ENST00000490135 L3MBTL1Q9Y468 752 aa7.8□□□□□ -1.16
SYNE1-228ENST00000490135 MAST3O60307 1309 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms