RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 ZFP91Q96JP5 570 aaPredicted RBP17.89■□□□□ 0.45
SYNE1-227ENST00000489156 CUEDC2Q9H467 287 aa17.89■□□□□ 0.45
SYNE1-227ENST00000489156 PCDHA5Q9Y5H7 936 aa17.89■□□□□ 0.45
SYNE1-227ENST00000489156 LBX1P52954 281 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 PGM5Q15124 567 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 TRIML1Q8N9V2 468 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 IL31RAQ8NI17 732 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 PAGE5Q96GU1 130 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 MAML3Q96JK9 1138 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 PDCD2LQ9BRP1 358 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 CBX8Q9HC52 389 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 KCNMB3Q9NPA1 279 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 SLC5A4Q9NY91 659 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 SRRDQ9UH36 339 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 RPTORQ8N122 1335 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 CENPFP49454 3210 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 KIAA1217Q5T5P2 1943 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 SMC2O95347 1197 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 HOXC6P09630 235 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 HOXD10P28358 340 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 ARHGEF6Q15052 776 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 CCL14Q16627 93 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 HAS1Q92839 578 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 BPIFA3Q9BQP9 254 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 TTC12Q9H892 705 aaPredicted RBP17.88■□□□□ 0.45
SYNE1-227ENST00000489156 PCDHA12Q9UN75 941 aa17.88■□□□□ 0.45
SYNE1-227ENST00000489156 DIS3Q9Y2L1 958 aaKnown RBP17.88■□□□□ 0.45
SYNE1-227ENST00000489156 GNRH1P01148 92 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 MYL1P05976 194 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 NR3C2P08235 984 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 MYCLP12524 364 aaPredicted RBP17.87■□□□□ 0.45
SYNE1-227ENST00000489156 CDC25AP30304 524 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 CCDC173Q0VFZ6 552 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 RRAGBQ5VZM2 374 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 PDXDC2PQ6P474 469 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 CABP7Q86V35 215 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 SMARCE1Q969G3 411 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 FAM20AQ96MK3 541 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 APBA2Q99767 749 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 MAGEF1Q9HAY2 307 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 LRWD1Q9UFC0 647 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 TRIM17Q9Y577 477 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 FRMPD4Q14CM0 1322 aa17.87■□□□□ 0.45
SYNE1-227ENST00000489156 SLC26A4O43511 780 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 MARCH6O60337 910 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 STAT6P42226 847 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 CTCFP49711 727 aaPredicted RBP17.86■□□□□ 0.45
SYNE1-227ENST00000489156 KARSQ15046 597 aaKnown RBP17.86■□□□□ 0.45
SYNE1-227ENST00000489156 OTOP1Q7RTM1 612 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 GSDMAQ96QA5 445 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 IWS1Q96ST2 819 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 FLRT1Q9NZU1 646 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 RASSF8Q8NHQ8 419 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 CALML4Q96GE6 196 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 PPP1R9BQ96SB3 815 aa17.86■□□□□ 0.45
SYNE1-227ENST00000489156 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-227ENST00000489156 ASB14A6NK59 587 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 PP2D1A8MPX8 630 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 XRCC5P13010 732 aaKnown RBP17.85■□□□□ 0.45
SYNE1-227ENST00000489156 EDNRBP24530 442 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 MRPS9P82933 396 aaKnown RBP17.85■□□□□ 0.45
SYNE1-227ENST00000489156 IQCB1Q15051 598 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 DPCR1Q3MIW9 517 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 PCNX4Q63HM2 1172 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 C11orf57Q6ZUT1 292 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-227ENST00000489156 ZNF467Q7Z7K2 595 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-227ENST00000489156 LUZP1Q86V48 1076 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 VSIG10LQ86VR7 867 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 HTTP42858 3142 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 LRRC37A2A6NM11 1700 aa17.85■□□□□ 0.45
SYNE1-227ENST00000489156 FAM86B1E9PN63 330 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 BIN1O00499 593 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 FAM86B2P0C5J1 330 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 CCND2P30279 289 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 ZNF76P36508 570 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 PDE4DQ08499 809 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 DPYDQ12882 1025 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 SEMA3FQ13275 785 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 PRR16Q569H4 304 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 NAALADL2Q58DX5 795 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 KRT79Q5XKE5 535 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 MAMDC4Q6UXC1 1216 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 ARMCX2Q7L311 632 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 EEPD1Q7L9B9 569 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 ETNPPLQ8TBG4 499 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 LENG9Q96B70 501 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 TINF2Q9BSI4 451 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 MMTAG2Q9BU76 263 aaKnown RBP17.84■□□□□ 0.45
SYNE1-227ENST00000489156 STK24Q9Y6E0 443 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 B4DLN1 442 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 GTPBP6O43824 516 aaPredicted RBP17.84■□□□□ 0.45
SYNE1-227ENST00000489156 PRR29P0C7W0 189 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 AFMP43652 599 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 STXBP2Q15833 593 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 MLKLQ8NB16 471 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 CYP2W1Q8TAV3 490 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 RAET1EQ8TD07 263 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 PDLIM2Q96JY6 352 aa17.84■□□□□ 0.45
SYNE1-227ENST00000489156 MPHOSPH6Q99547 160 aaKnown RBP17.84■□□□□ 0.45
SYNE1-227ENST00000489156 KBTBD4Q9NVX7 518 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms