RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, human

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-208	ENST00000486758	ADCY1	Q08828	1119 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	NLRP14	Q86W24	1093 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ZNF473	Q8WTR7	871 aa	Known RBP	13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ABCC6	O95255	1503 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758		A0A1B0GUA9	196 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PALM	O75781	387 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	KIF4A	O95239	1232 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	FAM153B	P0C7A2	387 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	GCK	P35557	465 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	KLHL30	Q0D2K2	578 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	STK4	Q13043	487 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	FAM153C	Q494X1	144 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SLC9C1	Q4G0N8	1177 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	DAAM2	Q86T65	1068 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SLF2	Q8IX21	1173 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TBC1D5	Q92609	795 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	P2RX5	Q93086	422 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PAIP2	Q9BPZ3	127 aa	Known RBP	13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	FAM153A	Q9UHL3	310 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	DDX39A	O00148	427 aa	Known RBP	13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CHUK	O15111	745 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	EEF1G	P26641	437 aa	Known RBP	13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L15	C9J2P7	530 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L13	C9JLJ4	530 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L11	C9JVI0	530 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L18	D6R9N7	530 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L22	D6RA61	530 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L17	D6RBQ6	530 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L19	D6RCP7	530 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L20	D6RJB6	530 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PPP1R37	O75864	691 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SLCO1A2	P46721	670 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L24	Q0WX57	530 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ANKRD40	Q6AI12	368 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CNNM4	Q6P4Q7	775 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L6P	Q6QN14	398 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CAPN11	Q9UMQ6	739 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ATP8A1	Q9Y2Q0	1164 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CEP83	Q9Y592	693 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SLIT3	O75094	1523 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SEMA3E	O15041	775 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	GDF11	O95390	407 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PDHB	P11177	359 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	AMPD2	Q01433	879 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	RPS6KA1	Q15418	735 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TTBK2	Q6IQ55	1244 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	EMB	Q6PCB8	327 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	LSM14B	Q9BX40	385 aa	Known RBP	13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	KIAA1024	Q9UPX6	916 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	MYH15	Q9Y2K3	1946 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PRR16	Q569H4	304 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TBC1D1	Q86TI0	1168 aa	Predicted RBP	13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	THOC1	Q96FV9	657 aa	Known RBP	13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PCDHA12	Q9UN75	941 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	BCL9	O00512	1426 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	EP400	Q96L91	3159 aa		13.53	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PHF20L1	A8MW92	1017 aa		13.52	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PRPF6	O94906	941 aa	Known RBP	13.52	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TTMP	Q5BVD1	217 aa		13.52	□□□□□ -0.24
SHROOM3-208	ENST00000486758	C12orf60	Q5U649	245 aa		13.52	□□□□□ -0.24
SHROOM3-208	ENST00000486758	RSRC1	Q96IZ7	334 aa	Known RBP	13.52	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TARSL2	A2RTX5	802 aa	Known RBP	13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	ABCB4	P21439	1286 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	GKAP1	Q5VSY0	366 aa	Predicted RBP	13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	FAM133A	Q8N9E0	248 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	DDX47	Q9H0S4	455 aa	Known RBP	13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	YY1AP1	Q9H869	796 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	PCDHA6	Q9UN73	950 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	PCDHA8	Q9Y5H6	950 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	LRP6	O75581	1613 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	AGPS	O00116	658 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	CTNND1	O60716	968 aa	Known RBP	13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	FGFR1OP	O95684	399 aa	Known RBP	13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	SERPINB2	P05120	415 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	GLI1	P08151	1106 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	TRADD	Q15628	312 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	SFMBT2	Q5VUG0	894 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	CLEC4G	Q6UXB4	293 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	ANKS4B	Q8N8V4	417 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	NDST4	Q9H3R1	872 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	NARF	Q9UHQ1	456 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	PCDHB13	Q9Y5F0	798 aa		13.52	□□□□□ -0.25
SHROOM3-208	ENST00000486758	KRIT1	O00522	736 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	CDC25C	P30307	473 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	SP4	Q02446	784 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	MKRN4P	Q13434	485 aa	Predicted RBP	13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	ALS2CL	Q60I27	953 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	FBXL16	Q8N461	479 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	BCS1L	Q9Y276	419 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	ITIH6	Q6UXX5	1313 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	SPDYE3	A6NKU9	549 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	SFI1	A8K8P3	1242 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	PLCG2	P16885	1265 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	GPSM2	P81274	684 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	TRIM68	Q6AZZ1	485 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	CCDC170	Q8IYT3	715 aa		13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	LARP4B	Q92615	738 aa	Known RBP	13.51	□□□□□ -0.25
SHROOM3-208	ENST00000486758	PSTPIP2	Q9H939	334 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms