RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 NAB2Q15742 525 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 WLSQ5T9L3 541 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 HGSNATQ68CP4 663 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 SYN2Q92777 582 aaPredicted RBP14.62□□□□□ -0.07
USP40-214ENST00000483519 INPP4AQ96PE3 977 aaPredicted RBP14.62□□□□□ -0.07
USP40-214ENST00000483519 ISCUQ9H1K1 167 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 SLC39A2Q9NP94 309 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 PCDHGC5Q9Y5F6 944 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 ZNF804BA4D1E1 1349 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 SERPING1P05155 500 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 CYP19A1P11511 503 aaPredicted RBP14.62□□□□□ -0.07
USP40-214ENST00000483519 HOXA7P31268 230 aaPredicted RBP14.62□□□□□ -0.07
USP40-214ENST00000483519 MEI1Q5TIA1 1274 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 CALML4Q96GE6 196 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 LAMB1P07942 1786 aa14.62□□□□□ -0.07
USP40-214ENST00000483519 CES2O00748 559 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 RAD51CO43502 376 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 FTCDO95954 541 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 DNA2P51530 1060 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 CHRNDQ07001 517 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 SFMBT2Q5VUG0 894 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 GUF1Q8N442 669 aaKnown RBP14.61□□□□□ -0.07
USP40-214ENST00000483519 USP38Q8NB14 1042 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 TAF4BQ92750 862 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 P3H4Q92791 437 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 CEP72Q9P209 647 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 ZBTB1Q9Y2K1 713 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 TRAPPC3O43617 180 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 MYBP10242 640 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 RC3H1Q5TC82 1133 aaKnown RBP14.61□□□□□ -0.07
USP40-214ENST00000483519 TAX1BP1Q86VP1 789 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 PARP9Q8IXQ6 854 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 STK32BQ9NY57 414 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 DDX20Q9UHI6 824 aaKnown RBP14.61□□□□□ -0.07
USP40-214ENST00000483519 ODF2LQ9ULJ1 636 aa14.61□□□□□ -0.07
USP40-214ENST00000483519 PVALEFA0A1B0GWK0 134 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 HSD17B3P37058 310 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 CYB5D1Q6P9G0 228 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 UNC13DQ70J99 1090 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 SV2BQ7L1I2 683 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 TMC4Q7Z404 712 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 HEATR3Q7Z4Q2 680 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 GPIHBP1Q8IV16 184 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 MAGEC3Q8TD91 643 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 SGSM3Q96HU1 749 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 TSG101Q99816 390 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 TANGO6Q9C0B7 1094 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 LRRC4BQ9NT99 713 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 ARPP21Q9UBL0 812 aaPredicted RBP14.6□□□□□ -0.07
USP40-214ENST00000483519 SLC12A6Q9UHW9 1150 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 CTNNA1P35221 906 aaKnown RBP14.6□□□□□ -0.07
USP40-214ENST00000483519 EHHADHQ08426 723 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 IFFO1Q0D2I5 559 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 MTMR3Q13615 1198 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 N4BP2L2Q92802 583 aaPredicted RBP14.6□□□□□ -0.07
USP40-214ENST00000483519 HPS3Q969F9 1004 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 SLC4A9Q96Q91 983 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 CRNKL1Q9BZJ0 848 aaKnown RBP14.6□□□□□ -0.07
USP40-214ENST00000483519 VEZTQ9HBM0 779 aa14.6□□□□□ -0.07
USP40-214ENST00000483519 EZRP15311 586 aaKnown RBP14.59□□□□□ -0.07
USP40-214ENST00000483519 ITPK1Q13572 414 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 ANKRD20A8PQ5CZ79 823 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 RCSD1Q6JBY9 416 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 KRT25Q7Z3Z0 450 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 KLHL7Q8IXQ5 586 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 CACNA2D3Q8IZS8 1091 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 BARHL2Q9NY43 387 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 TMEM59LQ9UK28 342 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 CNTNAP4Q9C0A0 1308 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 CCNT1O60563 726 aaKnown RBP14.59□□□□□ -0.07
USP40-214ENST00000483519 KLRC1P26715 233 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 SLC18A3Q16572 532 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 ODF2Q5BJF6 829 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 AGBL2Q5U5Z8 902 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 FOXR2Q6PJQ5 311 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 FUKQ8N0W3 1084 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 PNMA1Q8ND90 353 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 STK17AQ9UEE5 414 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 ATP6V0A2Q9Y487 856 aa14.59□□□□□ -0.07
USP40-214ENST00000483519 COL1A1P02452 1464 aaPredicted RBP14.58□□□□□ -0.07
USP40-214ENST00000483519 C5orf60A6NFR6 353 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 STXBP3O00186 592 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 ZPR1O75312 459 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 PAEPP09466 180 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 PPP2R2AP63151 447 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 ATP2B2Q01814 1243 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 ZNF844Q08AG5 666 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 GRM4Q14833 912 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 SUSD4Q5VX71 490 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 LRRC55Q6ZSA7 311 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 DGKHQ86XP1 1220 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 STAG2Q8N3U4 1231 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 SEC16BQ96JE7 1060 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 DCP1AQ9NPI6 582 aaPredicted RBP14.58□□□□□ -0.07
USP40-214ENST00000483519 NLRC4Q9NPP4 1024 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 RIC8AQ9NPQ8 531 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 ATP8A2Q9NTI2 1148 aa14.58□□□□□ -0.07
USP40-214ENST00000483519 SCN7AQ01118 1682 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 H0YGN5 161 aa14.58□□□□□ -0.08
USP40-214ENST00000483519 SLC8A1P32418 973 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms