RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 MAFGO15525 162 aa13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 CDC45O75419 566 aa13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 LGALS2P05162 132 aa13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 GNAT1P11488 350 aa13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 TRIM71Q2Q1W2 868 aaKnown RBP13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 PPP1R18Q6NYC8 613 aa13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 APOA5Q6Q788 366 aa13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 USP17L6PQ6QN14 398 aa13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 HERC6Q8IVU3 1022 aa13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 COL25A1Q9BXS0 654 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 NCOR1O75376 2440 aa13.95□□□□□ -0.18
SQSTM1-207ENST00000481335 SPDYE3A6NKU9 549 aa13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 POU3F3P20264 500 aaPredicted RBP13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 RABGGTBP53611 331 aa13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 WDR5P61964 334 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 SEMA3FQ13275 785 aa13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 DHX32Q7L7V1 743 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 MICU3Q86XE3 530 aa13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 PPP1R13LQ8WUF5 828 aa13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 PIBF1Q8WXW3 757 aa13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 GPKOWQ92917 476 aaPredicted RBP eCLIP13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 GPR20Q99678 358 aa13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 GLT8D2Q9H1C3 349 aa13.94□□□□□ -0.18
SQSTM1-207ENST00000481335 CNTNAP5Q8WYK1 1306 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 MUC3AQ02505 3323 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 SIP14410 1827 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 NBNO60934 754 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 CA3P07451 260 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 EXOSC10Q01780 885 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 IKBKEQ14164 716 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 GPNMBQ14956 572 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 TJAP1Q5JTD0 557 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 TRAF7Q6Q0C0 670 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 CYFIP1Q7L576 1253 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 ATXN2LQ8WWM7 1075 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 ATP6V0A1Q93050 837 aa13.93□□□□□ -0.18
SQSTM1-207ENST00000481335 NRCAMQ92823 1304 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 COL4A6Q14031 1691 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 ZBTB43O43298 467 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 LGR5O75473 907 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 FOSP01100 380 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 RPLP2P05387 115 aaKnown RBP13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 SMIM10L2AP0DMW4 78 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 SMIM10L2BP0DMW5 78 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 RXRAP19793 462 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 ADGRE1Q14246 886 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 RTN1Q16799 776 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 ZNF618Q5T7W0 954 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 USP38Q8NB14 1042 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 TSPYL2Q9H2G4 693 aaPredicted RBP13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 RTEL1Q9NZ71 1219 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 THEGQ9P2T0 379 aa13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 PRRC2BQ5JSZ5 2229 aaKnown RBP13.92□□□□□ -0.18
SQSTM1-207ENST00000481335 COL4A4P53420 1690 aaPredicted RBP13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 CCDC196A0A1B0GTZ2 297 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 RSPH10B2B2RC85 870 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 EPB41L2O43491 1005 aaKnown RBP13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 GTPBP6O43824 516 aaPredicted RBP13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 TLL1O43897 1013 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 GJB5O95377 273 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 RSPH10BP0C881 870 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 MYOGP15173 224 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 KCNA2P16389 499 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 MTMR1Q13613 665 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 HEATR3Q7Z4Q2 680 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 RPAINQ86UA6 219 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 CMTR1Q8N1G2 835 aaKnown RBP13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 FBXL16Q8N461 479 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 LRRC2Q9BYS8 371 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 RNPEPQ9H4A4 650 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 UBIAD1Q9Y5Z9 338 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 NID2Q14112 1375 aa13.91□□□□□ -0.18
SQSTM1-207ENST00000481335 SORBS3O60504 671 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 ITGB5P18084 799 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 IGFBP4P22692 258 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 THPOP40225 353 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 ADAM17P78536 824 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 ZNF200P98182 395 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 TAP1Q03518 808 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 AP3B2Q13367 1082 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 COL9A3Q14050 684 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 HIC1Q14526 733 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 TAF2Q6P1X5 1199 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 SEPT1Q8WYJ6 367 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 APBB2Q92870 758 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 KCNB2Q92953 911 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 TNPO1Q92973 898 aaKnown RBP13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 WNT8BQ93098 351 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 ZFP91Q96JP5 570 aaPredicted RBP13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 RAD9AQ99638 391 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 RIC8AQ9NPQ8 531 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 JADE2Q9NQC1 790 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 ERAP1Q9NZ08 941 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 LMCD1Q9NZU5 365 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 PCDHA6Q9UN73 950 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 PCDHA8Q9Y5H6 950 aa13.9□□□□□ -0.18
SQSTM1-207ENST00000481335 REV3LO60673 3130 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 TREHO43280 583 aa13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 TCF7P36402 384 aaPredicted RBP13.89□□□□□ -0.19
SQSTM1-207ENST00000481335 NAPAP54920 295 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms