RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 IRX3P78415 501 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 UBE3CQ15386 1083 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 FAM110CQ1W6H9 321 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 ABCB5Q2M3G0 1257 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 SHROOM1Q2M3G4 852 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 CERKLQ49MI3 558 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 ZSCAN25Q6NSZ9 544 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 LCORLQ8N3X6 602 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 SH3TC2Q8TF17 1288 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 FOXD4L4Q8WXT5 416 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 COL26A1Q96A83 441 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 ASCC2Q9H1I8 757 aaPredicted RBP8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 ECHDC1Q9NTX5 307 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 MCM9Q9NXL9 1143 aa8.18□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L15C9J2P7 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L13C9JLJ4 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L12C9JPN9 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L11C9JVI0 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L21D6R901 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L18D6R9N7 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L22D6RA61 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L17D6RBQ6 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L19D6RCP7 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L20D6RJB6 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 TNPO2O14787 897 aaKnown RBP8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 ADAM11O75078 769 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 MBD4O95243 580 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 HOXA7P31268 230 aaPredicted RBP8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 GRK4P32298 578 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 PLCD1P51178 756 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 ATP11AP98196 1134 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 PRKCZQ05513 592 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 USP17L24Q0WX57 530 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 RAB3GAP1Q15042 981 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 COX20Q5RI15 118 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 AMOTL1Q8IY63 956 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 ABI1Q8IZP0 508 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 OR13H1Q8NG92 308 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 SDR42E1Q8WUS8 393 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 COA7Q96BR5 231 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 FEZ1Q99689 392 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 ARMT1Q9H993 441 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 CABP5Q9NP86 173 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 DCP1AQ9NPI6 582 aaPredicted RBP8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 ATP8A2Q9NTI2 1148 aa8.17□□□□□ -1.1
CCDC88A-213ENST00000476903 PLXNB2O15031 1838 aa8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 DDX3YO15523 660 aaKnown RBP8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 EN2P19622 333 aaPredicted RBP8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 SHMT1P34896 483 aa8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 USP14P54578 494 aa8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 UBXN2AP68543 259 aa8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 GABPAQ06546 454 aa8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 FAM26DQ5JW98 314 aa8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 NFXL1Q6ZNB6 911 aa8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 GTF3C2Q8WUA4 911 aaPredicted RBP8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 YTHDC1Q96MU7 727 aaKnown RBP8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 BIN2Q9UBW5 565 aaPredicted RBP8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 SWAP70Q9UH65 585 aa8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 GABRQQ9UN88 632 aa8.16□□□□□ -1.1
CCDC88A-213ENST00000476903 TTC41PQ6P2S7 1318 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 MPHOSPH10O00566 681 aaKnown RBP8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 FSCN2O14926 492 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 ERC2O15083 957 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 PRKAB2O43741 272 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 ADCY3O60266 1144 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 FLT3LGP49771 235 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 HERVK_113P62684 666 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 ZYXQ15942 572 aaKnown RBP8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 OGFOD2Q6N063 350 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 CBLL1Q75N03 491 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 ETFBKMTQ8IXQ9 262 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 KBTBD3Q8NAB2 608 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 GPRC5AQ8NFJ5 357 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 UBASH3BQ8TF42 649 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 C12orf42Q96LP6 360 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 LACRTQ9GZZ8 138 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 KIAA1683Q9H0B3 1180 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 MORF4L1Q9UBU8 362 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 SLC4A4Q9Y6R1 1079 aa8.15□□□□□ -1.1
CCDC88A-213ENST00000476903 CHGBP05060 677 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 ZFYP08048 801 aaPredicted RBP8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 CYP2D6P10635 497 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 CCL5P13501 91 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 VCAM1P19320 739 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 CDC27P30260 824 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 GUCY1A2P33402 732 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 SEPT2Q15019 361 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 DUOXA2Q1HG44 320 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 LRRFIP1Q32MZ4 808 aaKnown RBP8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 LCE4AQ5TA78 99 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 TSHZ3Q63HK5 1081 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 TMEM179Q6ZVK1 233 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 KLHL23Q8NBE8 558 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 SLC44A5Q8NCS7 719 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 ACER1Q8TDN7 264 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 APPBP2Q92624 585 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 GLMNQ92990 594 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 CRBNQ96SW2 442 aa8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 P2RX7Q99572 595 aaKnown RBP8.14□□□□□ -1.11
CCDC88A-213ENST00000476903 PUS7LQ9H0K6 701 aaKnown RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms