RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 BCAS3Q9H6U6 928 aa13.83□□□□□ -0.2
SYNE1-223ENST00000476519 RIC8AQ9NPQ8 531 aa13.83□□□□□ -0.2
SYNE1-223ENST00000476519 BARHL2Q9NY43 387 aa13.83□□□□□ -0.2
SYNE1-223ENST00000476519 SORBS3O60504 671 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 LGALS2P05162 132 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 GNAT1P11488 350 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 CKBP12277 381 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 ATP2A2P16615 1042 aaKnown RBP13.82□□□□□ -0.2
SYNE1-223ENST00000476519 ITGB5P18084 799 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 RPS6KB1P23443 525 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 ADD1P35611 737 aaKnown RBP13.82□□□□□ -0.2
SYNE1-223ENST00000476519 PBX2P40425 430 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 METAP2P50579 478 aaKnown RBP eCLIP13.82□□□□□ -0.2
SYNE1-223ENST00000476519 NAPAP54920 295 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 GRIN2CQ14957 1233 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 UBE2SQ16763 222 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 WWC2Q6AWC2 1192 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 LRRC8DQ7L1W4 858 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 AGXT2Q9BYV1 514 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 JADE2Q9NQC1 790 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 UBIAD1Q9Y5Z9 338 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 CNTNAP5Q8WYK1 1306 aa13.82□□□□□ -0.2
SYNE1-223ENST00000476519 CUL9Q8IWT3 2517 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 C17orf102A2RUQ5 167 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 SMCO2A6NFE2 343 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 ZBBXA8MT70 800 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 BAIAP3O94812 1187 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 KCNA2P16389 499 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 CDC27P30260 824 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 HOXC8P31273 242 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 MTMR1Q13613 665 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 SERINC5Q86VE9 423 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 MYLIPQ8WY64 445 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 DHX38Q92620 1227 aaKnown RBP13.81□□□□□ -0.2
SYNE1-223ENST00000476519 SLC28A3Q9HAS3 691 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 PPP4R2Q9NY27 417 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 ZNF215Q9UL58 517 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-223ENST00000476519 NAP1L2Q9ULW6 460 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-223ENST00000476519 PCDHA11Q9Y5I1 949 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 CHD9Q3L8U1 2897 aa13.81□□□□□ -0.2
SYNE1-223ENST00000476519 MYH6P13533 1939 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 STXBP3O00186 592 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 ATP9AO75110 1047 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 CXCL10P02778 98 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 CPA1P15085 419 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 FOSL2P15408 326 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 ADCY7P51828 1080 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 EVCP57679 992 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 ZNF200P98182 395 aaPredicted RBP13.8□□□□□ -0.2
SYNE1-223ENST00000476519 APOBRQ0VD83 1088 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 AP3B2Q13367 1082 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 GPNMBQ14956 572 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 PFKFB3Q16875 520 aaPredicted RBP13.8□□□□□ -0.2
SYNE1-223ENST00000476519 TRIM71Q2Q1W2 868 aaKnown RBP13.8□□□□□ -0.2
SYNE1-223ENST00000476519 MCTP2Q6DN12 878 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 TYW1BQ6NUM6 668 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 SEPT1Q8WYJ6 367 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 BRF1Q92994 677 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 ATP6V0A1Q93050 837 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 SLC9A7Q96T83 725 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 MXRA8Q9BRK3 442 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 RNPEPQ9H4A4 650 aa13.8□□□□□ -0.2
SYNE1-223ENST00000476519 ABHD14A-ACY1A0A1B0GW23 586 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 KIF28PB7ZC32 967 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 PRPF3O43395 683 aaKnown RBP13.79□□□□□ -0.2
SYNE1-223ENST00000476519 EFCAB14O75071 495 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 CAND2O75155 1236 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 SMIM10L2AP0DMW4 78 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 SMIM10L2BP0DMW5 78 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 SCG2P13521 617 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 HIC1Q14526 733 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 CEP55Q53EZ4 464 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 ZNF618Q5T7W0 954 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 CCDC12Q8WUD4 166 aaPredicted RBP13.79□□□□□ -0.2
SYNE1-223ENST00000476519 TM6SF1Q9BZW5 370 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 ZSWIM6Q9HCJ5 1215 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 KCNH7Q9NS40 1196 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 EMSYQ7Z589 1322 aa13.79□□□□□ -0.2
SYNE1-223ENST00000476519 KIAA1217Q5T5P2 1943 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 ESYT2A0FGR8 921 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 RSPH10B2B2RC85 870 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 MEIS1O00470 390 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 NBNO60934 754 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 RSPH10BP0C881 870 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 SREBF1P36956 1147 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 THPOP40225 353 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 CLK2P49760 499 aaKnown RBP13.78□□□□□ -0.2
SYNE1-223ENST00000476519 RABGGTBP53611 331 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 AKAP17AQ02040 695 aaKnown RBP13.78□□□□□ -0.2
SYNE1-223ENST00000476519 UTP14CQ5TAP6 766 aaKnown RBP13.78□□□□□ -0.2
SYNE1-223ENST00000476519 CNKSR3Q6P9H4 555 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 TRAF7Q6Q0C0 670 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 RUFY3Q7L099 469 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 MAFAQ8NHW3 353 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-223ENST00000476519 TNPO1Q92973 898 aaKnown RBP13.78□□□□□ -0.2
SYNE1-223ENST00000476519 ZMYND12Q9H0C1 365 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 NKX2-4Q9H2Z4 354 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 SMARCAD1Q9H4L7 1026 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 C6orf50Q9HD87 102 aa13.78□□□□□ -0.2
SYNE1-223ENST00000476519 YBX2Q9Y2T7 364 aaKnown RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms