RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CCPG1Q9ULG6 757 aa9.57□□□□□ -0.88
USP54-211ENST00000474929 ISY1Q9ULR0 285 aaKnown RBP9.57□□□□□ -0.88
USP54-211ENST00000474929 GCN1Q92616 2671 aaKnown RBP9.57□□□□□ -0.88
USP54-211ENST00000474929 LRP3O75074 770 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 CYP2D6P10635 497 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 EDNRBP24530 442 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 DNAJB1P25685 340 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 FAM43BQ6ZT52 329 aaPredicted RBP9.56□□□□□ -0.88
USP54-211ENST00000474929 C1orf210Q8IVY1 113 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 STAG1Q8WVM7 1258 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 RIN2Q8WYP3 895 aaPredicted RBP9.56□□□□□ -0.88
USP54-211ENST00000474929 EMID1Q96A84 441 aaPredicted RBP9.56□□□□□ -0.88
USP54-211ENST00000474929 GPR20Q99678 358 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 ALG1Q9BT22 464 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 ADAM7Q9H2U9 754 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 POMKQ9H5K3 350 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 ERVK-5Q9HDB9 667 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 CYP26B1Q9NR63 512 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 WNT16Q9UBV4 365 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 FBXO4Q9UKT5 387 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 SMG5Q9UPR3 1016 aaKnown RBP9.56□□□□□ -0.88
USP54-211ENST00000474929 PCDHB12Q9Y5F1 795 aa9.56□□□□□ -0.88
USP54-211ENST00000474929 MYO10Q9HD67 2058 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 TMEM232C9JQI7 657 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 HAS3O00219 553 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 TBC1D4O60343 1298 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 DGKIO75912 1065 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 ICAM1P05362 532 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 ASGR2P07307 311 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 STAG3L1P0CL83 205 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 GNAT1P11488 350 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 SLC9C2Q5TAH2 1124 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 XRRA1Q6P2D8 792 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 SYCE2Q6PIF2 218 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 PPTC7Q8NI37 304 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 ATRIPQ8WXE1 791 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 MKL1Q969V6 931 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 GMCL1Q96IK5 515 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 CCDC8Q9H0W5 538 aaPredicted RBP9.55□□□□□ -0.88
USP54-211ENST00000474929 EPC1Q9H2F5 836 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 LZTS1Q9Y250 596 aa9.55□□□□□ -0.88
USP54-211ENST00000474929 MRPL42Q9Y6G3 142 aaKnown RBP9.55□□□□□ -0.88
USP54-211ENST00000474929 DDX49Q9Y6V7 483 aaKnown RBP9.55□□□□□ -0.88
USP54-211ENST00000474929 KIAA1671Q9BY89 1806 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 PTPDC1A2A3K4 754 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 C17orf102A2RUQ5 167 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 TTLL1O95922 423 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 PDE6AP16499 860 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 SLC1A4P43007 532 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 EVX2Q03828 476 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 ARHGAP1Q07960 439 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 OS9Q13438 667 aaPredicted RBP9.54□□□□□ -0.88
USP54-211ENST00000474929 KCNC3Q14003 757 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 BAATQ14032 418 aaPredicted RBP9.54□□□□□ -0.88
USP54-211ENST00000474929 MUM1L1Q5H9M0 696 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 SLFN13Q68D06 897 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 KIAA1841Q6NSI8 718 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 PHLDB3Q6NSJ2 640 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 LRSAM1Q6UWE0 723 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 NPAS4Q8IUM7 802 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 VN1R2Q8NFZ6 395 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 COPS5Q92905 334 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 ATP6V0A1Q93050 837 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 WNT8BQ93098 351 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 MAF1Q9H063 256 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 PRKRIP1Q9H875 184 aaPredicted RBP9.54□□□□□ -0.88
USP54-211ENST00000474929 MKNK2Q9HBH9 465 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 NGRNQ9NPE2 291 aaKnown RBP9.54□□□□□ -0.88
USP54-211ENST00000474929 DZANK1Q9NVP4 752 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 IGSF9Q9P2J2 1179 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 ANKFY1Q9P2R3 1169 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 CLIP2Q9UDT6 1046 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 LIMD1Q9UGP4 676 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 DBR1Q9UK59 544 aaKnown RBP9.54□□□□□ -0.88
USP54-211ENST00000474929 RAB23Q9ULC3 237 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 ZMIZ1Q9ULJ6 1067 aa9.54□□□□□ -0.88
USP54-211ENST00000474929 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.54□□□□□ -0.88
USP54-211ENST00000474929 BAZ2AQ9UIF9 1905 aaKnown RBP9.54□□□□□ -0.88
USP54-211ENST00000474929 PER2O15055 1255 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 EOMESO95936 686 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 RPLP2P05387 115 aaKnown RBP9.53□□□□□ -0.88
USP54-211ENST00000474929 MAGEA9P43362 315 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 LAMC2Q13753 1193 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 ALDH1L2Q3SY69 923 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 UNQ6494/PRO21346Q6UXR6 183 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 RASGRP2Q7LDG7 609 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 OTOP3Q7RTS5 596 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 CRIPAKQ8N1N5 446 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 LCORLQ8N3X6 602 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 KDF1Q8NAX2 398 aaPredicted RBP9.53□□□□□ -0.88
USP54-211ENST00000474929 FTHL17Q9BXU8 183 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 API5Q9BZZ5 524 aaKnown RBP9.53□□□□□ -0.88
USP54-211ENST00000474929 SMOC2Q9H3U7 446 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 PUF60Q9UHX1 559 aaKnown RBP9.53□□□□□ -0.88
USP54-211ENST00000474929 LHX6Q9UPM6 363 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 ZBED9Q6R2W3 1325 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 TTC3P53804 2025 aa9.53□□□□□ -0.88
USP54-211ENST00000474929 PLIN4Q96Q06 1357 aa9.52□□□□□ -0.88
USP54-211ENST00000474929 LAMTOR5O43504 91 aa9.52□□□□□ -0.89
USP54-211ENST00000474929 CTSHP09668 335 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms