RNA–Protein interactions for RNA: ENST00000473212.1

COL18A1-207, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 2,515 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-207ENST00000473212 TSG101Q99816 390 aa23.29■■□□□ 1.32
COL18A1-207ENST00000473212 LRRC4BQ9NT99 713 aa23.29■■□□□ 1.32
COL18A1-207ENST00000473212 DDX25Q9UHL0 483 aaKnown RBP23.29■■□□□ 1.32
COL18A1-207ENST00000473212 HSF2BPO75031 334 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 ORC2Q13416 577 aaPredicted RBP23.28■■□□□ 1.32
COL18A1-207ENST00000473212 BCAS4Q8TDM0 211 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 EFCC1Q9HA90 598 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 GRIN2DO15399 1336 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 SSU72P8A0A1W2PR75 194 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 ZSCAN5CA6NGD5 496 aaPredicted RBP23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L15C9J2P7 530 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L13C9JLJ4 530 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L11C9JVI0 530 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L18D6R9N7 530 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L22D6RA61 530 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L17D6RBQ6 530 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L19D6RCP7 530 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L20D6RJB6 530 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L24Q0WX57 530 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 USP17L6PQ6QN14 398 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 EFCAB13Q8IY85 973 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 TBC1D16Q8TBP0 767 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 CAVIN3Q969G5 261 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 POLD4Q9HCU8 107 aa23.28■■□□□ 1.32
COL18A1-207ENST00000473212 PACSIN2Q9UNF0 486 aaPredicted RBP23.28■■□□□ 1.32
COL18A1-207ENST00000473212 GAKO14976 1311 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 STAT3P40763 770 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 CFAP221Q4G0U5 840 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 ZCWPW2Q504Y3 356 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 ALS2CLQ60I27 953 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 FAM196BA6NMK8 535 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 EIF3HO15372 352 aaKnown RBP eCLIP23.27■■□□□ 1.325e-18■■□□□ 11.9
COL18A1-207ENST00000473212 GLI1P08151 1106 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 SCNN1DP51172 638 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 GABPAQ06546 454 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 GBP6Q6ZN66 633 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 MYOCDQ8IZQ8 938 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 RNF10Q8N5U6 811 aaKnown RBP23.27■■□□□ 1.32
COL18A1-207ENST00000473212 ZIM3Q96PE6 472 aa23.27■■□□□ 1.32
COL18A1-207ENST00000473212 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.26■■□□□ 1.31
COL18A1-207ENST00000473212 POTEB3A0JP26 581 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 POTECB2RU33 542 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 TAL1P17542 331 aaPredicted RBP23.26■■□□□ 1.31
COL18A1-207ENST00000473212 TNFRSF8P28908 595 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 RNASE9P60153 205 aaKnown RBP23.26■■□□□ 1.31
COL18A1-207ENST00000473212 POLR2FP61218 127 aaKnown RBP23.26■■□□□ 1.31
COL18A1-207ENST00000473212 SLC9C1Q4G0N8 1177 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 CCDC40Q4G0X9 1142 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 POTEBQ6S5H4 581 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 RIC8AQ9NPQ8 531 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 PANK4Q9NVE7 773 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 ESYT3A0FGR9 886 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 PALMO75781 387 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 EPB41P11171 864 aaKnown RBP23.26■■□□□ 1.31
COL18A1-207ENST00000473212 SMARCA1P28370 1054 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 CARSP49589 748 aaKnown RBP23.26■■□□□ 1.31
COL18A1-207ENST00000473212 ZNF543Q08ER8 600 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 C15orf52Q6ZUT6 534 aaKnown RBP23.26■■□□□ 1.31
COL18A1-207ENST00000473212 LSM14BQ9BX40 385 aaKnown RBP23.26■■□□□ 1.31
COL18A1-207ENST00000473212 PACSIN1Q9BY11 444 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 RAB34Q9BZG1 259 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 EDEM3Q9BZQ6 932 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 BCAS3Q9H6U6 928 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 KIAA1024Q9UPX6 916 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 COL4A3BPQ9Y5P4 624 aa23.26■■□□□ 1.31
COL18A1-207ENST00000473212 EBAG9O00559 213 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 MARCH6O60337 910 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 FTCDO95954 541 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 SNHG28P0DPA3 235 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 PDIA5Q14554 519 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 FAM26FQ5R3K3 315 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 FAM83BQ5T0W9 1011 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 SFMBT2Q5VUG0 894 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 CERS5Q8N5B7 392 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 NFU1Q9UMS0 254 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 RBAK-RBAKDNI3L0D1 243 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 FAM153BP0C7A2 387 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 PLCG2P16885 1265 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 PSMD2Q13200 908 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 PTPROQ16827 1216 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 FAM153CQ494X1 144 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 GLE1Q53GS7 698 aaKnown RBP23.25■■□□□ 1.31
COL18A1-207ENST00000473212 ASPRV1Q53RT3 343 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 IFT20Q8IY31 132 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 IFT81Q8WYA0 676 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 CEP72Q9P209 647 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 FAM153AQ9UHL3 310 aa23.25■■□□□ 1.31
COL18A1-207ENST00000473212 MPHOSPH10O00566 681 aaKnown RBP23.24■■□□□ 1.31
COL18A1-207ENST00000473212 SNAP25P60880 206 aa23.24■■□□□ 1.31
COL18A1-207ENST00000473212 FKBP3Q00688 224 aaKnown RBP23.24■■□□□ 1.31
COL18A1-207ENST00000473212 KCTD16Q68DU8 428 aa23.24■■□□□ 1.31
COL18A1-207ENST00000473212 TADA2BQ86TJ2 420 aa23.24■■□□□ 1.31
COL18A1-207ENST00000473212 SH2D3CQ8N5H7 860 aa23.24■■□□□ 1.31
COL18A1-207ENST00000473212 ZHX3Q9H4I2 956 aa23.24■■□□□ 1.31
COL18A1-207ENST00000473212 EPB41L5Q9HCM4 733 aa23.24■■□□□ 1.31
COL18A1-207ENST00000473212 TSKSQ9UJT2 592 aa23.24■■□□□ 1.31
COL18A1-207ENST00000473212 NHSQ6T4R5 1651 aa23.24■■□□□ 1.31
COL18A1-207ENST00000473212 A0A087WUV0 522 aaPredicted RBP23.24■■□□□ 1.31
COL18A1-207ENST00000473212 IGKV6D-41A0A0C4DH26 115 aa23.24■■□□□ 1.31
COL18A1-207ENST00000473212 HEXIM1O94992 359 aaKnown RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms