RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 FRMPD3Q5JV73 1810 aa16.16■□□□□ 0.18
BRCA1-211ENST00000472490 MCM3APO60318 1980 aa16.15■□□□□ 0.18
BRCA1-211ENST00000472490 TLR3O15455 904 aaKnown RBP16.15■□□□□ 0.18
BRCA1-211ENST00000472490 MMP1P03956 469 aa16.15■□□□□ 0.18
BRCA1-211ENST00000472490 KCNA2P16389 499 aa16.15■□□□□ 0.18
BRCA1-211ENST00000472490 NPY5RQ15761 445 aa16.15■□□□□ 0.18
BRCA1-211ENST00000472490 PLA2G4DQ86XP0 818 aa16.15■□□□□ 0.18
BRCA1-211ENST00000472490 C8orf76Q96K31 380 aa16.15■□□□□ 0.18
BRCA1-211ENST00000472490 TCEAL9Q9UHQ7 104 aa16.15■□□□□ 0.18
BRCA1-211ENST00000472490 FAM86B1E9PN63 330 aa16.14■□□□□ 0.17
BRCA1-211ENST00000472490 ADAMTS3O15072 1205 aa16.14■□□□□ 0.17
BRCA1-211ENST00000472490 PQBP1O60828 265 aaKnown RBP16.14■□□□□ 0.17
BRCA1-211ENST00000472490 FAM86B2P0C5J1 330 aa16.14■□□□□ 0.17
BRCA1-211ENST00000472490 HOXD8P13378 290 aaPredicted RBP16.14■□□□□ 0.17
BRCA1-211ENST00000472490 CDK7P50613 346 aa16.14■□□□□ 0.17
BRCA1-211ENST00000472490 PRPF38BQ5VTL8 546 aaKnown RBP16.14■□□□□ 0.17
BRCA1-211ENST00000472490 NFRKBQ6P4R8 1299 aa16.14■□□□□ 0.17
BRCA1-211ENST00000472490 MOXD1Q6UVY6 613 aa16.14■□□□□ 0.17
BRCA1-211ENST00000472490 CYP2W1Q8TAV3 490 aa16.14■□□□□ 0.17
BRCA1-211ENST00000472490 AGO4Q9HCK5 861 aaKnown RBP16.14■□□□□ 0.17
BRCA1-211ENST00000472490 JPH1Q9HDC5 661 aaPredicted RBP16.14■□□□□ 0.17
BRCA1-211ENST00000472490 NFASCO94856 1347 aa16.14■□□□□ 0.17
BRCA1-211ENST00000472490 IPO5O00410 1097 aaKnown RBP16.13■□□□□ 0.17
BRCA1-211ENST00000472490 SORBS3O60504 671 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 ATP9AO75110 1047 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 CD2BP2O95400 341 aaKnown RBP16.13■□□□□ 0.17
BRCA1-211ENST00000472490 SUPT20HL2P0C7V6 817 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 TLE2Q04725 743 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 PTPN11Q06124 597 aaPredicted RBP16.13■□□□□ 0.17
BRCA1-211ENST00000472490 PRR16Q569H4 304 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 KRT40Q6A162 431 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 SLC43A3Q8NBI5 491 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 SEPT1Q8WYJ6 367 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 GPR20Q99678 358 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 ZNF577Q9BSK1 485 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 GJB4Q9NTQ9 266 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 TBC1D22BQ9NU19 505 aa16.13■□□□□ 0.17
BRCA1-211ENST00000472490 ZNF215Q9UL58 517 aaPredicted RBP16.13■□□□□ 0.17
BRCA1-211ENST00000472490 IGLV3-22A0A075B6J6 115 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 H0YGN5 161 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 DTNBO60941 627 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 F2P00734 622 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 CLTBP09497 229 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 ARP10275 920 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 GCFC2P16383 781 aaKnown RBP16.12■□□□□ 0.17
BRCA1-211ENST00000472490 PSMC6P62333 389 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 FAM47CQ5HY64 1035 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 PIK3AP1Q6ZUJ8 805 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 NEK8Q86SG6 692 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 DIS3L2Q8IYB7 885 aaKnown RBP16.12■□□□□ 0.17
BRCA1-211ENST00000472490 PKD2L1Q9P0L9 805 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 SLC9A2Q9UBY0 812 aa16.12■□□□□ 0.17
BRCA1-211ENST00000472490 CYP3A7-CYP3A51PA0A087WV96 503 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 CYP3A7P24462 503 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 CHMP4BP1P59074 171 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 SP4Q02446 784 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 GNL2Q13823 731 aaKnown RBP16.11■□□□□ 0.17
BRCA1-211ENST00000472490 INF2Q27J81 1249 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 LETM2Q2VYF4 491 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 NBPF20Q3BBV1 942 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 Q4G0T1 1027 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 PPP4R3AQ6IN85 833 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 FAM126BQ8IXS8 530 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 C7orf31Q8N865 590 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 FBXO18Q8NFZ0 1043 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 TNPO1Q92973 898 aaKnown RBP16.11■□□□□ 0.17
BRCA1-211ENST00000472490 PRDM5Q9NQX1 630 aaPredicted RBP16.11■□□□□ 0.17
BRCA1-211ENST00000472490 SMC3Q9UQE7 1217 aa16.11■□□□□ 0.17
BRCA1-211ENST00000472490 MKI67P46013 3256 aaKnown RBP16.11■□□□□ 0.17
BRCA1-211ENST00000472490 BTBD18B2RXH4 712 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 H3BRB1 525 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 LGALS2P05162 132 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 ZNF286BP0CG31 522 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 TCF7P36402 384 aaPredicted RBP16.1■□□□□ 0.17
BRCA1-211ENST00000472490 FOSBP53539 338 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 NR5A1Q13285 461 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 MFSD10Q14728 455 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 KIAA0753Q2KHM9 967 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 SESTD1Q86VW0 696 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 OXER1Q8TDS5 423 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 RIT2Q99578 217 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 LBHD1Q9BQE6 289 aaPredicted RBP16.1■□□□□ 0.17
BRCA1-211ENST00000472490 C16orf70Q9BSU1 422 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 FOXP1Q9H334 677 aaPredicted RBP16.1■□□□□ 0.17
BRCA1-211ENST00000472490 TUT1Q9H6E5 874 aaKnown RBP16.1■□□□□ 0.17
BRCA1-211ENST00000472490 AZI2Q9H6S1 392 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 BCAS3Q9H6U6 928 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 TMEM39AQ9NV64 488 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 DDX25Q9UHL0 483 aaKnown RBP16.1■□□□□ 0.17
BRCA1-211ENST00000472490 GRIN2DO15399 1336 aa16.1■□□□□ 0.17
BRCA1-211ENST00000472490 CCNT1O60563 726 aaKnown RBP16.09■□□□□ 0.17
BRCA1-211ENST00000472490 PSEN2P49810 448 aa16.09■□□□□ 0.17
BRCA1-211ENST00000472490 KRT76Q01546 638 aa16.09■□□□□ 0.17
BRCA1-211ENST00000472490 FAAP100Q0VG06 881 aa16.09■□□□□ 0.17
BRCA1-211ENST00000472490 ITGB3BPQ13352 177 aaPredicted RBP16.09■□□□□ 0.17
BRCA1-211ENST00000472490 SMAP1Q8IYB5 467 aaPredicted RBP16.09■□□□□ 0.17
BRCA1-211ENST00000472490 KAT2BQ92831 832 aa16.09■□□□□ 0.17
BRCA1-211ENST00000472490 GLG1Q92896 1179 aa16.09■□□□□ 0.17
BRCA1-211ENST00000472490 SMARCAD1Q9H4L7 1026 aa16.09■□□□□ 0.17
BRCA1-211ENST00000472490 PDLIM7Q9NR12 457 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms