RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 BHLHE22Q8NFJ8 381 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-210ENST00000471439 OR6P1Q8NGX9 317 aa5.95□□□□□ -1.46
VPS13A-210ENST00000471439 PPP1R16BQ96T49 567 aa5.95□□□□□ -1.46
VPS13A-210ENST00000471439 ZNF552Q9H707 407 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-210ENST00000471439 GCM1Q9NP62 436 aa5.95□□□□□ -1.46
VPS13A-210ENST00000471439 SPTBN5Q9NRC6 3674 aaKnown RBP5.95□□□□□ -1.46
VPS13A-210ENST00000471439 WHRNQ9P202 907 aa5.95□□□□□ -1.46
VPS13A-210ENST00000471439 CGGBP1Q9UFW8 167 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-210ENST00000471439 LRPPRCP42704 1394 aaKnown RBP5.94□□□□□ -1.46
VPS13A-210ENST00000471439 OR14I1A6ND48 311 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 STK10O94804 968 aaKnown RBP5.94□□□□□ -1.46
VPS13A-210ENST00000471439 MED14OSP0DP75 135 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 TACR1P25103 407 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 EPHB3P54753 998 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 CASP7P55210 303 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 LCNL1Q6ZST4 164 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 ANKS3Q6ZW76 656 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS13A-210ENST00000471439 KCNN1Q92952 543 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 PLA2G2DQ9UNK4 145 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 SMG5Q9UPR3 1016 aaKnown RBP5.94□□□□□ -1.46
VPS13A-210ENST00000471439 SLC12A7Q9Y666 1083 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 EIF2AK4Q9P2K8 1649 aaKnown RBP5.94□□□□□ -1.46
VPS13A-210ENST00000471439 TUBGCP6Q96RT7 1819 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 PKD1L3Q7Z443 1732 aa5.94□□□□□ -1.46
VPS13A-210ENST00000471439 ARHGEF5Q12774 1597 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 OVOS2A0A0G2JMS6 1433 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 OVOS2A0A0J9YW53 1432 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 OVOS2Q6IE36 1432 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 NUDT19A8MXV4 375 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 TMEM253P0C7T8 217 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 PNLIPP16233 465 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 GLDCP23378 1020 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 VIPR1P32241 457 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 PLA2G5P39877 138 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 DLG4P78352 724 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 MVKQ03426 396 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 TCEAL1Q15170 157 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 GALNT18Q6P9A2 607 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 C6orf15Q6UXA7 325 aaPredicted RBP5.93□□□□□ -1.46
VPS13A-210ENST00000471439 KRT28Q7Z3Y7 464 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 ADAT2Q7Z6V5 191 aaKnown RBP5.93□□□□□ -1.46
VPS13A-210ENST00000471439 LRRC56Q8IYG6 542 aaPredicted RBP5.93□□□□□ -1.46
VPS13A-210ENST00000471439 PTCHD1Q96NR3 888 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 TNFRSF12AQ9NP84 129 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 CRTAC1Q9NQ79 661 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 FBLN5Q9UBX5 448 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 PRKAG3Q9UGI9 489 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 RAPGEFL1Q9UHV5 662 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 MBD1Q9UIS9 605 aaPredicted RBP5.93□□□□□ -1.46
VPS13A-210ENST00000471439 SF3B6Q9Y3B4 125 aaKnown RBP5.93□□□□□ -1.46
VPS13A-210ENST00000471439 CD2APQ9Y5K6 639 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 HCFC2Q9Y5Z7 792 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 FMN2Q9NZ56 1722 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 IGSF1Q8N6C5 1336 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 KDM2BQ8NHM5 1336 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 METP08581 1390 aa5.93□□□□□ -1.46
VPS13A-210ENST00000471439 NRXN3Q9Y4C0 1643 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 TNS3Q68CZ2 1445 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 CACNA1GO43497 2377 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 PARP4Q9UKK3 1724 aaKnown RBP5.92□□□□□ -1.46
VPS13A-210ENST00000471439 A0A1W2PQ45 241 aaPredicted RBP5.92□□□□□ -1.46
VPS13A-210ENST00000471439 A0A1W2PQY0 241 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 TCAF2A6NFQ2 919 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 WTIPA6NIX2 430 aaPredicted RBP5.92□□□□□ -1.46
VPS13A-210ENST00000471439 KLF4O43474 513 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 LINC00310P59036 64 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 ERVFRD-1P60508 538 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 RBL2Q08999 1139 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 SSPNQ14714 243 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 KCNA10Q16322 511 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 LCE4AQ5TA78 99 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 LARP1BQ659C4 914 aaKnown RBP5.92□□□□□ -1.46
VPS13A-210ENST00000471439 CELF2-AS1Q8N7Q2 184 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 MICAL1Q8TDZ2 1067 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 ARMC5Q96C12 935 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 LNPKQ9C0E8 428 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 GBP3Q9H0R5 595 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 SLC52A1Q9NWF4 448 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 KLHL14Q9P2G3 628 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 ACSL6Q9UKU0 697 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 SUGT1Q9Y2Z0 365 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 PNPLA7Q6ZV29 1317 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 KIF15Q9NS87 1388 aa5.92□□□□□ -1.46
VPS13A-210ENST00000471439 TEX51A0A1B0GUA7 166 aa5.91□□□□□ -1.46
VPS13A-210ENST00000471439 AURKAO14965 403 aa5.91□□□□□ -1.46
VPS13A-210ENST00000471439 TBX1O43435 398 aa5.91□□□□□ -1.46
VPS13A-210ENST00000471439 SRSF3P84103 164 aaKnown RBP5.91□□□□□ -1.46
VPS13A-210ENST00000471439 CYP4F8P98187 520 aa5.91□□□□□ -1.46
VPS13A-210ENST00000471439 POU4F1Q01851 419 aa5.91□□□□□ -1.46
VPS13A-210ENST00000471439 MAP2K1Q02750 393 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-210ENST00000471439 MRM1Q6IN84 353 aaKnown RBP5.91□□□□□ -1.46
VPS13A-210ENST00000471439 ARHGEF39Q8N4T4 335 aa5.91□□□□□ -1.46
VPS13A-210ENST00000471439 CNTD2Q9H8S5 307 aa5.91□□□□□ -1.46
VPS13A-210ENST00000471439 RXFP1Q9HBX9 757 aa5.91□□□□□ -1.46
VPS13A-210ENST00000471439 MKI67P46013 3256 aaKnown RBP5.91□□□□□ -1.46
VPS13A-210ENST00000471439 CEP290O15078 2479 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 PEX10O60683 326 aa5.9□□□□□ -1.46
VPS13A-210ENST00000471439 ENDOUP21128 410 aaKnown RBP5.9□□□□□ -1.46
VPS13A-210ENST00000471439 CDR1P51861 262 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms