RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-208	ENST00000470531	DDAH1	O94760	285 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	EEF2	P13639	858 aa	Known RBP	11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	IL17A	Q16552	155 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	MTR	Q99707	1265 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	IRAK4	Q9NWZ3	460 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	STIM2	Q9P246	746 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	AMACR	Q9UHK6	382 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	HPCAL4	Q9UM19	191 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	PCDHA6	Q9UN73	950 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	PCDHA8	Q9Y5H6	950 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	PCDHA1	Q9Y5I3	950 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	CDK8	P49336	464 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	ITPK1	Q13572	414 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	FAM133B	Q5BKY9	247 aa	Known RBP	11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	TADA2B	Q86TJ2	420 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	NSUN4	Q96CB9	384 aa	Known RBP	11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	VEZT	Q9HBM0	779 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	ARMCX3	Q9UH62	379 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	FAM184B	Q9ULE4	1060 aa		11.74	□□□□□ -0.53
CHD3-208	ENST00000470531	ABCC12	Q96J65	1359 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	MYMK	A6NI61	221 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	ARHGAP25	P42331	645 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	PLCB3	Q01970	1234 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	PPP1R7	Q15435	360 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	MICALCL	Q6ZW33	695 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	CELF4	Q9BZC1	486 aa	Known RBP	11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	USP40	Q9NVE5	1235 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	PLAA	Q9Y263	795 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	UST	Q9Y2C2	406 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	SPOP	O43791	374 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	TCP1	P17987	556 aa	Known RBP	11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	MRPL12	P52815	198 aa	Known RBP	11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	SEPT7	Q16181	437 aa	Known RBP	11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	APTX	Q7Z2E3	356 aa	Known RBP	11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	KAT2B	Q92831	832 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	NUDT12	Q9BQG2	462 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	CNTNAP5	Q8WYK1	1306 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	MYH8	P13535	1937 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	GRIK5	Q16478	980 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	STK36	Q9NRP7	1315 aa		11.73	□□□□□ -0.53
CHD3-208	ENST00000470531	TOPAZ1	Q8N9V7	1692 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	RFX7	Q2KHR2	1363 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	XRCC5	P13010	732 aa	Known RBP	11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	NR1D1	P20393	614 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	TNFAIP3	P21580	790 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	IRAK1	P51617	712 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	MESD	Q14696	234 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	LRRC14	Q15048	493 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	FAM83B	Q5T0W9	1011 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	NSMF	Q6X4W1	530 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	CCNI2	Q6ZMN8	369 aa	Predicted RBP	11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	ATP8A2	Q9NTI2	1148 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	USP17L10	C9JJH3	530 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	IRF6	O14896	467 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	EXOC3	O60645	756 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	HLA-DOA	P06340	250 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	FAM153B	P0C7A2	387 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	KLRC1	P26715	233 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	SARS	P49591	514 aa	Known RBP	11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	MAN2A1	Q16706	1144 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	FAM153C	Q494X1	144 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	CCDC105	Q8IYK2	499 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	BHMT2	Q9H2M3	363 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	FAM153A	Q9UHL3	310 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	NF2	P35240	595 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	SEC23A	Q15436	765 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	DHTKD1	Q96HY7	919 aa	Predicted RBP	11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	CAPN11	Q9UMQ6	739 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	SNX24	Q9Y343	169 aa		11.72	□□□□□ -0.53
CHD3-208	ENST00000470531	KDM3B	Q7LBC6	1761 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	KRT5	P13647	590 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	SLC9A1	P19634	815 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	GSTO1	P78417	241 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	SF3B2	Q13435	895 aa	Known RBP	11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	CTTN	Q14247	550 aa	Known RBP	11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	PPP2R5B	Q15173	497 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	ALX1	Q15699	326 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	EXOC3L4	Q17RC7	722 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	MDM1	Q8TC05	714 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	SPIRE2	Q8WWL2	714 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	CUL5	Q93034	780 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	ZIM3	Q96PE6	472 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	FAM118B	Q9BPY3	351 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	DBNDD1	Q9H9R9	158 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	SNX12	Q9UMY4	172 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	SLIT1	O75093	1534 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	DAPK3	O43293	454 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	TUBB	P07437	444 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	PEX19	P40855	299 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	HDLBP	Q00341	1268 aa	Known RBP	11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	FKBP3	Q00688	224 aa	Known RBP	11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	CDKAL1	Q5VV42	579 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	PTF1A	Q7RTS3	328 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	CEP120	Q8N960	986 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	EMILIN3	Q9NT22	766 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	TMOD4	Q9NZQ9	345 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	ARHGAP20	Q9P2F6	1191 aa		11.71	□□□□□ -0.53
CHD3-208	ENST00000470531	DNM3	Q9UQ16	869 aa		11.71	□□□□□ -0.53

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