RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 IPO7O95373 1038 aaKnown RBP21.16■□□□□ 0.98
VIM-203ENST00000469543 WHAMMP3Q1A5X7 153 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 ZCWPW2Q504Y3 356 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 TATDN1Q6P1N9 297 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 CDAN1Q8IWY9 1227 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 SMARCAL1Q9NZC9 954 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 PCNTO95613 3336 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 CLRN2A0PK11 232 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 MOCS3O95396 460 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 POLD1P28340 1107 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 KIF11P52732 1056 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 UBXN2AP68543 259 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 LRRC63Q05C16 580 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 BAP1Q92560 729 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 IFIH1Q9BYX4 1025 aaKnown RBP21.15■□□□□ 0.98
VIM-203ENST00000469543 DHX36Q9H2U1 1008 aaKnown RBP21.15■□□□□ 0.98
VIM-203ENST00000469543 NYAP2Q9P242 653 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 COL11A2P13942 1736 aaPredicted RBP21.15■□□□□ 0.98
VIM-203ENST00000469543 SFI1A8K8P3 1242 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 TCP10L2B9ZVM9 353 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 ZBTB39O15060 712 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 KRT18P05783 430 aaKnown RBP21.15■□□□□ 0.98
VIM-203ENST00000469543 SPIRE1Q08AE8 756 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 KIF5AQ12840 1032 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 CCDC40Q4G0X9 1142 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 MSANTD4Q8NCY6 345 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 MYO3BQ8WXR4 1341 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 DEF6Q9H4E7 631 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 PCDHA13Q9Y5I0 950 aa21.15■□□□□ 0.98
VIM-203ENST00000469543 LENG9Q96B70 501 aa21.14■□□□□ 0.98
VIM-203ENST00000469543 CSRNP1Q96S65 589 aa21.14■□□□□ 0.98
VIM-203ENST00000469543 IDI2Q9BXS1 227 aa21.14■□□□□ 0.98
VIM-203ENST00000469543 UBXN6Q9BZV1 441 aa21.14■□□□□ 0.98
VIM-203ENST00000469543 PDE11AQ9HCR9 933 aa21.14■□□□□ 0.98
VIM-203ENST00000469543 EHD2Q9NZN4 543 aa21.14■□□□□ 0.98
VIM-203ENST00000469543 ARFGEF1Q9Y6D6 1849 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 YDJCA8MPS7 323 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 RSPH10B2B2RC85 870 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 H0YIN7 160 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 AKR1B10O60218 316 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 RSPH10BP0C881 870 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 FKBP3Q00688 224 aaKnown RBP21.14■□□□□ 0.97
VIM-203ENST00000469543 SPA17Q15506 151 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 DNAAF5Q86Y56 855 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 CCDC170Q8IYT3 715 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 PKNOX2Q96KN3 472 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 EMILIN3Q9NT22 766 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 RGL1Q9NZL6 768 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 RAB21Q9UL25 225 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 SIPA1L1O43166 1804 aa21.14■□□□□ 0.97
VIM-203ENST00000469543 NRXN2Q9P2S2 1712 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 A0A1W2PQJ5 194 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 NOL4O94818 638 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 SPATA31C1P0DKV0 1188 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 PPP1R2P41236 205 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 KCNA1Q09470 495 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 ZYXQ15942 572 aaKnown RBP21.13■□□□□ 0.97
VIM-203ENST00000469543 FIGNQ5HY92 759 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 CACNA2D4Q7Z3S7 1137 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 ETNPPLQ8TBG4 499 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 ACER1Q8TDN7 264 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 CRYGNQ8WXF5 182 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 AMNQ9BXJ7 453 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 PDGFDQ9GZP0 370 aaPredicted RBP21.13■□□□□ 0.97
VIM-203ENST00000469543 BMP2KQ9NSY1 1161 aaPredicted RBP21.13■□□□□ 0.97
VIM-203ENST00000469543 COL4A3BPQ9Y5P4 624 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 SLX4Q8IY92 1834 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 GCFC2P16383 781 aaKnown RBP21.13■□□□□ 0.97
VIM-203ENST00000469543 VAV2P52735 878 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 PAPD7Q5XG87 772 aaKnown RBP21.13■□□□□ 0.97
VIM-203ENST00000469543 GSPT2Q8IYD1 628 aaKnown RBP21.13■□□□□ 0.97
VIM-203ENST00000469543 COG1Q8WTW3 980 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 L1RE1Q9UN81 338 aa21.13■□□□□ 0.97
VIM-203ENST00000469543 FAM170AA1A519 330 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 BUB1O43683 1085 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 TLR2O60603 784 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 USP11P51784 963 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 SLC12A3P55017 1021 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 BRD3Q15059 726 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 FBXO11Q86XK2 927 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 NCK2O43639 380 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 POLR2FP61218 127 aaKnown RBP21.12■□□□□ 0.97
VIM-203ENST00000469543 RASSF7Q02833 373 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 PSMD2Q13200 908 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 ADAM9Q13443 819 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 TMEM179Q6ZVK1 233 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 SECISBP2LQ93073 1101 aaKnown RBP21.12■□□□□ 0.97
VIM-203ENST00000469543 TSG101Q99816 390 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 NT5C3AQ9H0P0 336 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 MAP2K7O14733 419 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 C21orf2O43822 256 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 PHACTR2O75167 634 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 CCDC84Q86UT8 332 aaPredicted RBP21.12■□□□□ 0.97
VIM-203ENST00000469543 PIGOQ8TEQ8 1089 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 DCAF4Q8WV16 495 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 KCTD10Q9H3F6 313 aa21.12■□□□□ 0.97
VIM-203ENST00000469543 SPDYE3A6NKU9 549 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 EML1O00423 815 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 HOXD13P35453 343 aa21.11■□□□□ 0.97
VIM-203ENST00000469543 DNA2P51530 1060 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms