RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.09□□□□□ -0.47
MSX1-202ENST00000468421 LOC102724159A0A0B4J2E5 919 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 SYCE3A1L190 88 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 SPATA31C2B4DYI2 1134 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 FOXN1O15353 648 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 CHMP2AO43633 222 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 MED24O75448 989 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 EIF3JO75822 258 aaKnown RBP12.09□□□□□ -0.47
MSX1-202ENST00000468421 TBC1D8O95759 1140 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 PRR29P0C7W0 189 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 PLCG1P19174 1290 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 ICAM3P32942 547 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 CAP1Q01518 475 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 PWP2Q15269 919 aaKnown RBP12.09□□□□□ -0.47
MSX1-202ENST00000468421 ZRSR1Q15695 479 aaKnown RBP12.09□□□□□ -0.47
MSX1-202ENST00000468421 GNPTABQ3T906 1256 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 NAALADL2Q58DX5 795 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 PDXDC2PQ6P474 469 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 RBM43Q6ZSC3 357 aaKnown RBP12.09□□□□□ -0.47
MSX1-202ENST00000468421 SEPT14Q6ZU15 432 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 ARMCX2Q7L311 632 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 EEPD1Q7L9B9 569 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 DPP9Q86TI2 863 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 FBXO16Q8IX29 292 aaPredicted RBP12.09□□□□□ -0.47
MSX1-202ENST00000468421 GRAMD1CQ8IYS0 662 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 USP6NLQ92738 828 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 ERCC4Q92889 916 aaPredicted RBP12.09□□□□□ -0.47
MSX1-202ENST00000468421 MAML3Q96JK9 1138 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 TNMDQ9H2S6 317 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 BCAS3Q9H6U6 928 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 RNF186Q9NXI6 227 aa12.09□□□□□ -0.47
MSX1-202ENST00000468421 POTEB3A0JP26 581 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 ASB14A6NK59 587 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 B4DLN1 442 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 MAFGO15525 162 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 TRPA1O75762 1119 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 CCNE2O96020 404 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 CCT6AP40227 531 aaKnown RBP12.08□□□□□ -0.48
MSX1-202ENST00000468421 STAT6P42226 847 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 LACTBP83111 547 aaPredicted RBP12.08□□□□□ -0.48
MSX1-202ENST00000468421 SP2Q02086 613 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 MAP2K5Q13163 448 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 TMEM119Q4V9L6 283 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 HYIQ5T013 277 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 RRAGBQ5VZM2 374 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 KRT79Q5XKE5 535 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 POTEBQ6S5H4 581 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 MAMDC4Q6UXC1 1216 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 KCNK18Q7Z418 384 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 ZNF467Q7Z7K2 595 aaPredicted RBP12.08□□□□□ -0.48
MSX1-202ENST00000468421 CKAP2LQ8IYA6 745 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 CNNM3Q8NE01 707 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 RASSF8Q8NHQ8 419 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 MPHOSPH6Q99547 160 aaKnown RBP12.08□□□□□ -0.48
MSX1-202ENST00000468421 CFHR5Q9BXR6 569 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 BLOC1S4Q9NUP1 217 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 CCDC39Q9UFE4 941 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 GJD2Q9UKL4 321 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 DIS3Q9Y2L1 958 aaKnown RBP12.08□□□□□ -0.48
MSX1-202ENST00000468421 TELO2Q9Y4R8 837 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 NFASCO94856 1347 aa12.08□□□□□ -0.48
MSX1-202ENST00000468421 MYH9P35579 1960 aaKnown RBP12.07□□□□□ -0.48
MSX1-202ENST00000468421 TNPO2O14787 897 aaKnown RBP12.07□□□□□ -0.48
MSX1-202ENST00000468421 SORBS3O60504 671 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 ARIH2O95376 493 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 SNAI1O95863 264 aaPredicted RBP12.07□□□□□ -0.48
MSX1-202ENST00000468421 SLFN14P0C7P3 912 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 SPATA31C1P0DKV0 1188 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 UBA1P22314 1058 aaKnown RBP12.07□□□□□ -0.48
MSX1-202ENST00000468421 MDM2Q00987 491 aaPredicted RBP12.07□□□□□ -0.48
MSX1-202ENST00000468421 PNOCQ13519 176 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 SH3RF1Q7Z6J0 888 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 IQUBQ8NA54 791 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 STAMQ92783 540 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 CALML4Q96GE6 196 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 PAGE5Q96GU1 130 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 CDHR1Q96JP9 859 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 TRIM47Q96LD4 638 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 MTRQ99707 1265 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 EIF2AK1Q9BQI3 630 aaKnown RBP12.07□□□□□ -0.48
MSX1-202ENST00000468421 SDF4Q9BRK5 362 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 KATNBL1Q9H079 304 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 TBC1D22BQ9NU19 505 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.07□□□□□ -0.48
MSX1-202ENST00000468421 RGL1Q9NZL6 768 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 FLRT1Q9NZU1 646 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 USP25Q9UHP3 1055 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 KDM3AQ9Y4C1 1321 aa12.07□□□□□ -0.48
MSX1-202ENST00000468421 POTEFA5A3E0 1075 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 CTAGE5O15320 804 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 HOXC6P09630 235 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 CYP2B6P20813 491 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 RPA1P27694 616 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 CASP1P29466 404 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 AFMP43652 599 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 PSMC4P43686 418 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 FCGRTP55899 365 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 ZNF445P59923 1031 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 CYP4A11Q02928 519 aa12.06□□□□□ -0.48
MSX1-202ENST00000468421 EPHA7Q15375 998 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms