RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 KCNA2P16389 499 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 MCM2P49736 904 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 NR5A1Q13285 461 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 NONOQ15233 471 aaKnown RBP eCLIP13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 INF2Q27J81 1249 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 NBPF20Q3BBV1 942 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 KRT40Q6A162 431 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 METTL7BQ6UX53 244 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 PIK3AP1Q6ZUJ8 805 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 DAGLBQ8NCG7 672 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 EMID1Q96A84 441 aaPredicted RBP13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 PRKAG2Q9UGJ0 569 aa13.69□□□□□ -0.22
SHROOM3-202ENST00000466541 GRIN2DO15399 1336 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 FAM205CA6NFA0 338 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 M0R2N6 131 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 MEIS1O00470 390 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 CYP3A4P08684 503 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 HMGN5P82970 282 aaKnown RBP13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 LETM2Q2VYF4 491 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 KRT25Q7Z3Z0 450 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 SH3RF1Q7Z6J0 888 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 GIMAP8Q8ND71 665 aaPredicted RBP13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 SENP7Q9BQF6 1050 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 SDF4Q9BRK5 362 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 ZNF577Q9BSK1 485 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 TRPV6Q9H1D0 765 aa13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 AGO4Q9HCK5 861 aaKnown RBP13.68□□□□□ -0.22
SHROOM3-202ENST00000466541 BTBD18B2RXH4 712 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 MMP1P03956 469 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 ATP2B1P20020 1258 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 PSEN2P49810 448 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 USP11P51784 963 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 MDM2Q00987 491 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 ITGB3BPQ13352 177 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 GNL2Q13823 731 aaKnown RBP13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 MFSD10Q14728 455 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 SNX17Q15036 470 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 SAFBQ15424 915 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 EARS2Q5JPH6 523 aaKnown RBP13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 TRIM50Q86XT4 487 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 DIS3L2Q8IYB7 885 aaKnown RBP13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 FAM177A1Q8N128 213 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 GJA10Q969M2 543 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 GPR20Q99678 358 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 JPH1Q9HDC5 661 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 FOXD4L1Q9NU39 408 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 TMEM39AQ9NV64 488 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 SLC9A2Q9UBY0 812 aa13.67□□□□□ -0.22
SHROOM3-202ENST00000466541 IGLV3-22A0A075B6J6 115 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 IPO5O00410 1097 aaKnown RBP13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 TLR3O15455 904 aaKnown RBP13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 MAFGO15525 162 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 PPFIA4O75335 1185 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 TDP2O95551 362 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 LGALS2P05162 132 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 CLTBP09497 229 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 GJB2P29033 226 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 TCF7P36402 384 aaPredicted RBP13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 CDK7P50613 346 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 KIAA0753Q2KHM9 967 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 NIPA1Q7RTP0 329 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 CRYGNQ8WXF5 182 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 KAT2BQ92831 832 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 TRMT13Q9NUP7 481 aaKnown RBP13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 TCEAL9Q9UHQ7 104 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 SMC3Q9UQE7 1217 aa13.66□□□□□ -0.22
SHROOM3-202ENST00000466541 MROH7Q68CQ1 1323 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 SCN10AQ9Y5Y9 1956 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 KAT6AQ92794 2004 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 TRIM43BA6NCK2 446 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 EDIL3O43854 480 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 MARCH6O60337 910 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 CCNT1O60563 726 aaKnown RBP13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 MARK3P27448 753 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 SETQ01105 290 aaPredicted RBP13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 FAAP100Q0VG06 881 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 PRPF38BQ5VTL8 546 aaKnown RBP13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 C1orf53Q5VUE5 145 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 MCTP1Q6DN14 999 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 ANKRD33Q7Z3H0 272 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 C7orf31Q8N865 590 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 IL27Q8NEV9 243 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 SEPT1Q8WYJ6 367 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 GLG1Q92896 1179 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 TRIM43Q96BQ3 446 aaPredicted RBP13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 LBHD1Q9BQE6 289 aaPredicted RBP13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 PDLIM7Q9NR12 457 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 NOD1Q9Y239 953 aa13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 TRIP12Q14669 1992 aaPredicted RBP13.65□□□□□ -0.22
SHROOM3-202ENST00000466541 GSTTP1A0A1W2PQM5 241 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 H3BRB1 525 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 MSH4O15457 936 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 CHMP2AO43633 222 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 B4GALT4O60513 344 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 CYP2C9P11712 490 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 RAG1P15918 1043 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 CIITAP33076 1130 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 MAGEA10P43363 369 aaPredicted RBP13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 ACTR2P61160 394 aa13.64□□□□□ -0.23
SHROOM3-202ENST00000466541 CHRDL2Q6WN34 429 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms