RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 MRPS25P82663 173 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 CCZ1BP86790 482 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 CCZ1P86791 482 aaPredicted RBP20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 PPP2R5CQ13362 524 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 CDKL2Q92772 493 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 ZCCHC17Q9NP64 241 aaKnown RBP20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 SCOCQ9UIL1 159 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 ANKARQ7Z5J8 1434 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 A0A1W2PQC6 194 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 TAF11Q15544 211 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 CARD10Q9BWT7 1032 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 NCOA3Q9Y6Q9 1424 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 HEG1Q9ULI3 1381 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 ZNF804BA4D1E1 1349 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 M0QZ92 97 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 GTF2IP78347 998 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 IQCB1Q15051 598 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 XKR9Q5GH70 373 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 UNC13DQ70J99 1090 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 LRRC7Q96NW7 1537 aa20.59■□□□□ 0.89
CCDC88B-204ENST00000463837 COG7P83436 770 aa20.58■□□□□ 0.89
CCDC88B-204ENST00000463837 PDCLQ13371 301 aa20.58■□□□□ 0.89
CCDC88B-204ENST00000463837 ORC2Q13416 577 aaPredicted RBP20.58■□□□□ 0.89
CCDC88B-204ENST00000463837 SLFN13Q68D06 897 aa20.58■□□□□ 0.89
CCDC88B-204ENST00000463837 SPC25Q9HBM1 224 aa20.58■□□□□ 0.89
CCDC88B-204ENST00000463837 A2ML1A8K2U0 1454 aa20.58■□□□□ 0.89
CCDC88B-204ENST00000463837 LMNAP02545 664 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 ABCD1P33897 745 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 SLCO1A2P46721 670 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 GNPTABQ3T906 1256 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 RINT1Q6NUQ1 792 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 ACCSQ96QU6 501 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 BRIP1Q9BX63 1249 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 HAUS2Q9NVX0 235 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 CROCC2H7BZ55 1655 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 PRR36Q9H6K5 1346 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 PRKAB2O43741 272 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 ATP5HO75947 161 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 PABPC4Q13310 644 aaKnown RBP eCLIP20.58■□□□□ 0.882e-9■■□□□ 12.8
CCDC88B-204ENST00000463837 KAZNQ674X7 775 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 ALKBH5Q6P6C2 394 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 TMTC3Q6ZXV5 915 aa20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 PIH1D3Q9NQM4 214 aaKnown RBP20.58■□□□□ 0.88
CCDC88B-204ENST00000463837 RNF8O76064 485 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 TNNC2P02585 160 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 CUL4BQ13620 913 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 MAP7D3Q8IWC1 876 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 MXD3Q9BW11 206 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 LEMD3Q9Y2U8 911 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 DBN1Q16643 649 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 PDZD4Q76G19 769 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 HACE1Q8IYU2 909 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 SCYL3Q8IZE3 742 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 DDX17Q92841 729 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 WDR11Q9BZH6 1224 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 PRAMEF22A3QJZ6 481 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 MIF4GDA9UHW6 222 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 ERVV-1B6SEH8 477 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 CERKLQ49MI3 558 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 TMCO4Q5TGY1 634 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 DGKHQ86XP1 1220 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 ST7Q9NRC1 585 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 GINS2Q9Y248 185 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 COG1Q8WTW3 980 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 CCDC127Q96BQ5 260 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 MRPL47Q9HD33 250 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 TRPC5Q9UL62 973 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 BCS1LQ9Y276 419 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 ROBO2Q9HCK4 1378 aa20.57■□□□□ 0.88
CCDC88B-204ENST00000463837 GFPT2O94808 682 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 TTLL1O95922 423 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 DDX27Q96GQ7 796 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 EPC1Q9H2F5 836 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 SETBP1Q9Y6X0 1596 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 PRKG1Q13976 671 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 ALX1Q15699 326 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 ANGPTL2Q9UKU9 493 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 GDAQ9Y2T3 454 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 CYP4A11Q02928 519 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 ICA1Q05084 483 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 ALCAMQ13740 583 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 TMED2Q15363 201 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 DIXDC1Q155Q3 683 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 PVALEFA0A1B0GWK0 134 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 MAPK13O15264 365 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 SERPINB6P35237 376 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 GLI2P10070 1586 aa20.56■□□□□ 0.88
CCDC88B-204ENST00000463837 YWHAGP61981 247 aaKnown RBP eCLIP20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 ZBTB8OSQ8IWT0 167 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 NACC1Q96RE7 527 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 CSRNP1Q96S65 589 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 MSH2P43246 934 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 PALMO75781 387 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 DCTN3O75935 186 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 PLA2G4BP0C869 781 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 GPR162Q16538 588 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 NXNQ6DKJ4 435 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 PI16Q6UXB8 463 aa20.55■□□□□ 0.88
CCDC88B-204ENST00000463837 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms