RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 LRRC63Q05C16 580 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 C16orf86Q6ZW13 317 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 UBLCP1Q8WVY7 318 aaPredicted RBP12.78□□□□□ -0.36
NPHP4-204ENST00000460696 DHX36Q9H2U1 1008 aaKnown RBP12.78□□□□□ -0.36
NPHP4-204ENST00000460696 L2HGDHQ9H9P8 463 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 TACC3Q9Y6A5 838 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 POTEFA5A3E0 1075 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 LRRC53A6NM62 1247 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 POTEIP0CG38 1075 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 SARSP49591 514 aaKnown RBP12.78□□□□□ -0.36
NPHP4-204ENST00000460696 KLK7P49862 253 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 SLC7A5Q01650 507 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 GRIK5Q16478 980 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 ODR4Q5SWX8 454 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 POTEGQ6S5H5 508 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 POTEEQ6S8J3 1075 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 GBP6Q6ZN66 633 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 ADAT2Q7Z6V5 191 aaKnown RBP12.78□□□□□ -0.36
NPHP4-204ENST00000460696 ELOA2Q8IYF1 753 aaPredicted RBP12.78□□□□□ -0.36
NPHP4-204ENST00000460696 PIGOQ8TEQ8 1089 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 RAD54LQ92698 747 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 ZMYND12Q9H0C1 365 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 MLXIPQ9HAP2 919 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 POLRMTO00411 1230 aaKnown RBP12.78□□□□□ -0.36
NPHP4-204ENST00000460696 ATP2C2O75185 946 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 RHOBTB3O94955 611 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 PRPHP41219 470 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 CASP8Q14790 479 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 MAP1SQ66K74 1059 aaPredicted RBP12.78□□□□□ -0.36
NPHP4-204ENST00000460696 CC2D2BQ6DHV5 1058 aa12.78□□□□□ -0.36
NPHP4-204ENST00000460696 GPR75-ASB3A0A0A6YYF3 556 aa12.77□□□□□ -0.36
NPHP4-204ENST00000460696 MYMKA6NI61 221 aa12.77□□□□□ -0.36
NPHP4-204ENST00000460696 F5H6K3 240 aa12.77□□□□□ -0.36
NPHP4-204ENST00000460696 KLRC3Q07444 240 aa12.77□□□□□ -0.36
NPHP4-204ENST00000460696 PPP4R3AQ6IN85 833 aa12.77□□□□□ -0.36
NPHP4-204ENST00000460696 RRAGCQ9HB90 399 aa12.77□□□□□ -0.36
NPHP4-204ENST00000460696 CNOT7Q9UIV1 285 aaKnown RBP12.77□□□□□ -0.36
NPHP4-204ENST00000460696 LTBP4Q8N2S1 1624 aa12.77□□□□□ -0.36
NPHP4-204ENST00000460696 LMO7Q8WWI1 1683 aa12.77□□□□□ -0.36
NPHP4-204ENST00000460696 PALM3A6NDB9 673 aaPredicted RBP12.77□□□□□ -0.37
NPHP4-204ENST00000460696 NEFHP12036 1026 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 HARSP12081 509 aaKnown RBP12.77□□□□□ -0.37
NPHP4-204ENST00000460696 CETN2P41208 172 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 PPP4CP60510 307 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 COASYQ13057 564 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 CTTNQ14247 550 aaKnown RBP12.77□□□□□ -0.37
NPHP4-204ENST00000460696 SYDE2Q5VT97 1194 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 CCDC25Q86WR0 208 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 MICALL2Q8IY33 904 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 CTTNBP2NLQ9P2B4 639 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 CSADQ9Y600 493 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 PVALEFA0A1B0GWK0 134 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 ATP8B1O43520 1251 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 ATP1A1P05023 1023 aaKnown RBP12.77□□□□□ -0.37
NPHP4-204ENST00000460696 ARHGAP4P98171 946 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 MDM2Q00987 491 aaPredicted RBP12.77□□□□□ -0.37
NPHP4-204ENST00000460696 GUCY2DQ02846 1103 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 ZNF543Q08ER8 600 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 NAA35Q5VZE5 725 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 DAAM2Q86T65 1068 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 GIMAP8Q8ND71 665 aaPredicted RBP12.77□□□□□ -0.37
NPHP4-204ENST00000460696 JRKLQ9Y4A0 524 aa12.77□□□□□ -0.37
NPHP4-204ENST00000460696 EBAG9O00559 213 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 H2AFZP0C0S5 128 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 PSMD2Q13200 908 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 RCSD1Q6JBY9 416 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 PDXDC2PQ6P474 469 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 H2AFVQ71UI9 128 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 MIER3Q7Z3K6 550 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 FAM212AQ96EL1 285 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 POLLQ9UGP5 575 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 CAPN11Q9UMQ6 739 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 SORBS3O60504 671 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 GFPT1Q06210 699 aaPredicted RBP12.76□□□□□ -0.37
NPHP4-204ENST00000460696 GSPT2Q8IYD1 628 aaKnown RBP12.76□□□□□ -0.37
NPHP4-204ENST00000460696 PAGR1Q9BTK6 254 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 INTS13Q9NVM9 706 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 SPOPO43791 374 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 KRT5P13647 590 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 GUF1Q8N442 669 aaKnown RBP12.76□□□□□ -0.37
NPHP4-204ENST00000460696 TSKSQ9UJT2 592 aa12.76□□□□□ -0.37
NPHP4-204ENST00000460696 LRRC37A3O60309 1634 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 NPHP3-ACAD11A0A0J9YXS1 232 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 A0A1W2PQC6 194 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 TESPA1A2RU30 521 aaPredicted RBP12.75□□□□□ -0.37
NPHP4-204ENST00000460696 SRGNP10124 158 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 RDXP35241 583 aaKnown RBP12.75□□□□□ -0.37
NPHP4-204ENST00000460696 PAK2Q13177 524 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 USP37Q86T82 979 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 CCDC127Q96BQ5 260 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 KRT12Q99456 494 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 FAM204AQ9H8W3 233 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 MRPL11Q9Y3B7 192 aaKnown RBP12.75□□□□□ -0.37
NPHP4-204ENST00000460696 KDM3BQ7LBC6 1761 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 CYTH3O43739 400 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 GMPSP49915 693 aaPredicted RBP12.75□□□□□ -0.37
NPHP4-204ENST00000460696 STAT2P52630 851 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 ERVK-24P63145 666 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 TMEM179Q6ZVK1 233 aa12.75□□□□□ -0.37
NPHP4-204ENST00000460696 SP8Q8IXZ3 490 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms