RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 SF3B3Q15393 1217 aaKnown RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 CFAP221Q4G0U5 840 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 LRCH2Q5VUJ6 765 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 HGSNATQ68CP4 663 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 PDXDC1Q6P996 788 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 KRT25Q7Z3Z0 450 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 YTHDF3Q7Z739 585 aaKnown RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 IFT20Q8IY31 132 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 GUF1Q8N442 669 aaKnown RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 PRPF38AQ8NAV1 312 aaKnown RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 SYN2Q92777 582 aaPredicted RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 MTMR8Q96EF0 704 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 NOX5Q96PH1 765 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 LZTS2Q9BRK4 669 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 PALM3A6NDB9 673 aaPredicted RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 WTIPA6NIX2 430 aaPredicted RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 FSBPO95073 299 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 KCNV1Q6PIU1 500 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 TSHZ1Q6ZSZ6 1077 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 UNC13DQ70J99 1090 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 EIF1ADQ8N9N8 165 aaKnown RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS50-208ENST00000458707 EEF2KMTQ96G04 330 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 DRC1Q96MC2 740 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 FAM207AQ9NSI2 230 aaPredicted RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 STK17AQ9UEE5 414 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 GGA2Q9UJY4 613 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 NIP7Q9Y221 180 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS50-208ENST00000458707 ZNF233A6NK53 670 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 NCK2O43639 380 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 GLI1P08151 1106 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 HNRNPH1P31943 449 aaKnown RBP9.37□□□□□ -0.91
VPS50-208ENST00000458707 CXCR5P32302 372 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 USP8P40818 1118 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 MATR3P43243 847 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS50-208ENST00000458707 CRKLP46109 303 aaKnown RBP9.37□□□□□ -0.91
VPS50-208ENST00000458707 FNTAP49354 379 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 TFAP4Q01664 338 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 EHHADHQ08426 723 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 PAK2Q13177 524 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 C12orf60Q5U649 245 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 LRRC55Q6ZSA7 311 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 RRAGAQ7L523 313 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 WHAMMQ8TF30 809 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 TBC1D22AQ8WUA7 517 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 PIK3R5Q8WYR1 880 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 HINFPQ9BQA5 517 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 SPZ1Q9BXG8 430 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 NUCKS1Q9H1E3 243 aaKnown RBP9.37□□□□□ -0.91
VPS50-208ENST00000458707 EPN3Q9H201 632 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 SMARCAL1Q9NZC9 954 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 EHD2Q9NZN4 543 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 MINPP1Q9UNW1 487 aa9.37□□□□□ -0.91
VPS50-208ENST00000458707 NDUFAB1O14561 156 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 MEFVO15553 781 aaPredicted RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 MYBP10242 640 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 LSP1P33241 339 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 SLC1A4P43007 532 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 KCNMA1Q12791 1236 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 PSMD2Q13200 908 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 PDCLQ13371 301 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 NONOQ15233 471 aaKnown RBP eCLIP9.36□□□□□ -0.91
VPS50-208ENST00000458707 SKIDA1Q1XH10 827 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 CFAP58Q5T655 872 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 SV2BQ7L1I2 683 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 HEATR3Q7Z4Q2 680 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 NEK8Q86SG6 692 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 CALML4Q96GE6 196 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 MMRN2Q9H8L6 949 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 SLC39A2Q9NP94 309 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 BLOC1S4Q9NUP1 217 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 CEP72Q9P209 647 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 PCDHGC5Q9Y5F6 944 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 MYMKA6NI61 221 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 CES2O00748 559 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 CCNT1O60563 726 aaKnown RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 COQ9O75208 318 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 HEXIM1O94992 359 aaKnown RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 KRT14P02533 472 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 FAM153BP0C7A2 387 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 NEFHP12036 1026 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 SMARCA1P28370 1054 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 CARSP49589 748 aaKnown RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 NAP1L1P55209 391 aaKnown RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 MRPS25P82663 173 aaKnown RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 RASSF7Q02833 373 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 GFPT1Q06210 699 aaPredicted RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 GRB10Q13322 594 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 NAB2Q15742 525 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 FAM153CQ494X1 144 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 MEI1Q5TIA1 1274 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 NAA35Q5VZE5 725 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 HPS3Q969F9 1004 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 MS4A14Q96JA4 679 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 ATP6V1G3Q96LB4 118 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 RNPC3Q96LT9 517 aaKnown RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 CCDC43Q96MW1 224 aaKnown RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 INPP4AQ96PE3 977 aaPredicted RBP9.36□□□□□ -0.91
VPS50-208ENST00000458707 RIC8AQ9NPQ8 531 aa9.36□□□□□ -0.91
VPS50-208ENST00000458707 FAM153AQ9UHL3 310 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms