RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PUF60Q9UHX1 559 aaKnown RBP16.7■□□□□ 0.26
LDLR-202ENST00000455727 TRAF5O00463 557 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 OPLAHO14841 1288 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 LCA5LO95447 670 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 DMTNQ08495 405 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 USH1GQ495M9 461 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 ARSHQ5FYA8 562 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 HERC4Q5GLZ8 1057 aaPredicted RBP16.69■□□□□ 0.26
LDLR-202ENST00000455727 PAPD7Q5XG87 772 aaKnown RBP16.69■□□□□ 0.26
LDLR-202ENST00000455727 PPP4R3CPQ6ZMV5 832 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 TSGA10Q9BZW7 698 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.69■□□□□ 0.26
LDLR-202ENST00000455727 ARHGEF10LQ9HCE6 1279 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 ARFGAP3Q9NP61 516 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 PRR12Q9ULL5 1215 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 CTAGE15A4D2H0 777 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 SPDYE2BA6NHP3 402 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 TUBBP07437 444 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 CTAGE8P0CG41 777 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 SPDYE6P0CI01 402 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 STAT3P40763 770 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 VAV2P52735 878 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 SNAP25P60880 206 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 CTAGE6Q86UF2 777 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 CTAGE4Q8IX94 777 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 SYT2Q8N9I0 419 aaPredicted RBP16.69■□□□□ 0.26
LDLR-202ENST00000455727 HNRNPLLQ8WVV9 542 aaKnown RBP16.69■□□□□ 0.26
LDLR-202ENST00000455727 KCTD10Q9H3F6 313 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 MMRN2Q9H8L6 949 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 RAB21Q9UL25 225 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 DNM3Q9UQ16 869 aa16.69■□□□□ 0.26
LDLR-202ENST00000455727 FAM86B1E9PN63 330 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 FAM86B2P0C5J1 330 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 SPATA31C1P0DKV0 1188 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 SPA17Q15506 151 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 EDRF1Q3B7T1 1238 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 RSBN1LQ6PCB5 846 aaPredicted RBP16.68■□□□□ 0.26
LDLR-202ENST00000455727 SCFD1Q8WVM8 642 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 FAM151AQ8WW52 585 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 FAM207AQ9NSI2 230 aaPredicted RBP16.68■□□□□ 0.26
LDLR-202ENST00000455727 EMILIN3Q9NT22 766 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 TMX2Q9Y320 296 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 EPHB6O15197 1021 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 STAT2P52630 851 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 KIF5AQ12840 1032 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 NEK11Q8NG66 645 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 BAP1Q92560 729 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 LACRTQ9GZZ8 138 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 NUCKS1Q9H1E3 243 aaKnown RBP16.68■□□□□ 0.26
LDLR-202ENST00000455727 ZSWIM4Q9H7M6 989 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 ANKZF1Q9H8Y5 726 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 ARHGAP20Q9P2F6 1191 aa16.68■□□□□ 0.26
LDLR-202ENST00000455727 ANO9A1A5B4 782 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 POTEFA5A3E0 1075 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 RCCD1A6NED2 376 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 POTEIP0CG38 1075 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 POTEGQ6S5H5 508 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 POTEEQ6S8J3 1075 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 AEBP2Q6ZN18 517 aaPredicted RBP16.67■□□□□ 0.26
LDLR-202ENST00000455727 TRIM59Q8IWR1 403 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 GMLQ99445 158 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 FAM184BQ9ULE4 1060 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 SMCHD1A6NHR9 2005 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 MSH4O15457 936 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 TBC1D8O95759 1140 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 KRT18P05783 430 aaKnown RBP16.67■□□□□ 0.26
LDLR-202ENST00000455727 VIL1P09327 827 aaKnown RBP16.67■□□□□ 0.26
LDLR-202ENST00000455727 RXRBP28702 533 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 PLA2G4AP47712 749 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 KCNMA1Q12791 1236 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 GIT2Q14161 759 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 CCDC40Q4G0X9 1142 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 FKBP1CQ5VVH2 108 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 NCAPH2Q6IBW4 605 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 RTKN2Q8IZC4 609 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 SYN2Q92777 582 aaPredicted RBP16.67■□□□□ 0.26
LDLR-202ENST00000455727 POLR3CQ9BUI4 534 aaPredicted RBP16.67■□□□□ 0.26
LDLR-202ENST00000455727 FGFBP2Q9BYJ0 223 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 GOPCQ9HD26 462 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 VAV3Q9UKW4 847 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 SAR1BQ9Y6B6 198 aa16.67■□□□□ 0.26
LDLR-202ENST00000455727 KIF13BQ9NQT8 1826 aa16.66■□□□□ 0.26
LDLR-202ENST00000455727 NPHP3-ACAD11A0A0J9YXS1 232 aa16.66■□□□□ 0.26
LDLR-202ENST00000455727 ZNF263O14978 683 aa16.66■□□□□ 0.26
LDLR-202ENST00000455727 C21orf2O43822 256 aa16.66■□□□□ 0.26
LDLR-202ENST00000455727 FAM193AP78312 1265 aa16.66■□□□□ 0.26
LDLR-202ENST00000455727 UIMC1Q96RL1 719 aa16.66■□□□□ 0.26
LDLR-202ENST00000455727 PSMD1Q99460 953 aa16.66■□□□□ 0.26
LDLR-202ENST00000455727 TBC1D7Q9P0N9 293 aa16.66■□□□□ 0.26
LDLR-202ENST00000455727 ZNF70Q9UC06 446 aaPredicted RBP16.66■□□□□ 0.26
LDLR-202ENST00000455727 HDAC9Q9UKV0 1011 aa16.66■□□□□ 0.26
LDLR-202ENST00000455727 PLA2G6O60733 806 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 USO1O60763 962 aaKnown RBP16.65■□□□□ 0.26
LDLR-202ENST00000455727 SEC31AO94979 1220 aaKnown RBP16.65■□□□□ 0.26
LDLR-202ENST00000455727 MAPK8IP2Q13387 824 aaPredicted RBP16.65■□□□□ 0.26
LDLR-202ENST00000455727 PDXDC1Q6P996 788 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 RRAGAQ7L523 313 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 RPGRIP1Q96KN7 1286 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 TANGO6Q9C0B7 1094 aa16.65■□□□□ 0.26
LDLR-202ENST00000455727 STK32BQ9NY57 414 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms