RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 TMEM39BQ9GZU3 492 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 PACSIN2Q9UNF0 486 aaPredicted RBP13.22□□□□□ -0.29
SMPD4-213ENST00000454468 GAS7O60861 476 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 ACTN1P12814 892 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 KIF11P52732 1056 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 DHX36Q9H2U1 1008 aaKnown RBP13.22□□□□□ -0.29
SMPD4-213ENST00000454468 MED24O75448 989 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 FTCDO95954 541 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 CT47A1Q5JQC4 288 aaPredicted RBP13.22□□□□□ -0.29
SMPD4-213ENST00000454468 PRAMEF18Q5VWM3 479 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 RABGGTAQ92696 567 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 RUFY1Q96T51 708 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 BCAS3Q9H6U6 928 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 COL4A3BPQ9Y5P4 624 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 GAKO14976 1311 aa13.22□□□□□ -0.29
SMPD4-213ENST00000454468 ECM2O94769 699 aaPredicted RBP13.21□□□□□ -0.29
SMPD4-213ENST00000454468 ARHGAP44Q17R89 818 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 CCDC93Q567U6 631 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 CC2D1AQ6P1N0 951 aaPredicted RBP13.21□□□□□ -0.29
SMPD4-213ENST00000454468 TMEM179Q6ZVK1 233 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 CNKSR1Q969H4 720 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 IKZF4Q9H2S9 585 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 CAPN11Q9UMQ6 739 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 EIF3JO75822 258 aaKnown RBP13.21□□□□□ -0.29
SMPD4-213ENST00000454468 STAT2P52630 851 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 EZH2Q15910 746 aaKnown RBP13.21□□□□□ -0.29
SMPD4-213ENST00000454468 SFMBT2Q5VUG0 894 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 LRCH2Q5VUJ6 765 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 CDAN1Q8IWY9 1227 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 FAM163AQ96GL9 167 aaPredicted RBP13.21□□□□□ -0.29
SMPD4-213ENST00000454468 FAM198AQ9UFP1 575 aa13.21□□□□□ -0.29
SMPD4-213ENST00000454468 LLGL1Q15334 1064 aa13.21□□□□□ -0.3
SMPD4-213ENST00000454468 SLC9C1Q4G0N8 1177 aa13.21□□□□□ -0.3
SMPD4-213ENST00000454468 PROCA1Q8NCQ7 364 aaPredicted RBP13.21□□□□□ -0.3
SMPD4-213ENST00000454468 HAS1Q92839 578 aa13.21□□□□□ -0.3
SMPD4-213ENST00000454468 MMS19Q96T76 1030 aa13.21□□□□□ -0.3
SMPD4-213ENST00000454468 GOLPH3Q9H4A6 298 aa13.21□□□□□ -0.3
SMPD4-213ENST00000454468 ARMCX3Q9UH62 379 aaPredicted RBP13.21□□□□□ -0.3
SMPD4-213ENST00000454468 ATF5Q9Y2D1 282 aaPredicted RBP13.21□□□□□ -0.3
SMPD4-213ENST00000454468 VSNL1P62760 191 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 HHIPL2Q6UWX4 724 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 TAF4BQ92750 862 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 PNKPQ96T60 521 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 PCIF1Q9H4Z3 704 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 DNAJC18Q9H819 358 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 RABGAP1Q9Y3P9 1069 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 C4AP0C0L4 1744 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 C4BP0C0L5 1744 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 MYL1P05976 194 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 ABCB4P21439 1286 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 HLTFQ14527 1009 aaKnown RBP eCLIP13.2□□□□□ -0.3
SMPD4-213ENST00000454468 KIAA0753Q2KHM9 967 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 EHBP1Q8NDI1 1231 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 LUC7LQ9NQ29 371 aaKnown RBP13.2□□□□□ -0.3
SMPD4-213ENST00000454468 PCDHA13Q9Y5I0 950 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 RCCD1A6NED2 376 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 EHHADHQ08426 723 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 STRIP1Q5VSL9 837 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 NFRKBQ6P4R8 1299 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 ADAT2Q7Z6V5 191 aaKnown RBP13.2□□□□□ -0.3
SMPD4-213ENST00000454468 KLHL7Q8IXQ5 586 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 BANK1Q8NDB2 785 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 MAGEF1Q9HAY2 307 aa13.2□□□□□ -0.3
SMPD4-213ENST00000454468 M0R2N6 131 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 PPP1R12BO60237 982 aaPredicted RBP13.19□□□□□ -0.3
SMPD4-213ENST00000454468 ZC2HC1CQ53FD0 456 aaPredicted RBP13.19□□□□□ -0.3
SMPD4-213ENST00000454468 DEFB132Q7Z7B7 95 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 CATSPER3Q86XQ3 398 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 PRR12Q9ULL5 1215 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 ANKRD36CQ5JPF3 1778 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 TMEM110-MUSTN1A8MSY1 372 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 GCOM1H8Y6P7 765 aaPredicted RBP13.19□□□□□ -0.3
SMPD4-213ENST00000454468 POLR2MP0CAP2 368 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 MYBP10242 640 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 RXRBP28702 533 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 NMT1P30419 496 aaKnown RBP13.19□□□□□ -0.3
SMPD4-213ENST00000454468 PBX1P40424 430 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 HERVK_113P62684 666 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 DGKZQ13574 1117 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 GUF1Q8N442 669 aaKnown RBP13.19□□□□□ -0.3
SMPD4-213ENST00000454468 MTMR9Q96QG7 549 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 MORC2Q9Y6X9 1032 aaPredicted RBP13.19□□□□□ -0.3
SMPD4-213ENST00000454468 KDM3AQ9Y4C1 1321 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 CACNA1SQ13698 1873 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 ZBTB7AO95365 584 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 XRCC5P13010 732 aaKnown RBP13.19□□□□□ -0.3
SMPD4-213ENST00000454468 GABPAQ06546 454 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 ASIC2Q16515 512 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 WDR59Q6PJI9 974 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 SLFN12Q8IYM2 578 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 JDP2Q8WYK2 163 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 DYDC2Q96IM9 177 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 FZD1Q9UP38 647 aa13.19□□□□□ -0.3
SMPD4-213ENST00000454468 SNED1Q8TER0 1413 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 FAM86B1E9PN63 330 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 FAM86B2P0C5J1 330 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 KCNA1Q09470 495 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 ODR4Q5SWX8 454 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 SH3BP5LQ7L8J4 393 aa13.18□□□□□ -0.3
SMPD4-213ENST00000454468 REEP2Q9BRK0 252 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms