RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 TRIM22Q8IYM9 498 aa16.7■□□□□ 0.26
USP39-206ENST00000448971 CCDC12Q8WUD4 166 aaPredicted RBP16.7■□□□□ 0.26
USP39-206ENST00000448971 COPS5Q92905 334 aa16.7■□□□□ 0.26
USP39-206ENST00000448971 SLKQ9H2G2 1235 aaPredicted RBP16.7■□□□□ 0.26
USP39-206ENST00000448971 MTIF3Q9H2K0 278 aaKnown RBP16.7■□□□□ 0.26
USP39-206ENST00000448971 EHMT1Q9H9B1 1298 aa16.7■□□□□ 0.26
USP39-206ENST00000448971 PRPF3O43395 683 aaKnown RBP16.69■□□□□ 0.26
USP39-206ENST00000448971 IFNAR1P17181 557 aa16.69■□□□□ 0.26
USP39-206ENST00000448971 CPT1AP50416 773 aa16.69■□□□□ 0.26
USP39-206ENST00000448971 RABGGTBP53611 331 aa16.69■□□□□ 0.26
USP39-206ENST00000448971 GNPTABQ3T906 1256 aa16.69■□□□□ 0.26
USP39-206ENST00000448971 BRDTQ58F21 947 aaPredicted RBP16.69■□□□□ 0.26
USP39-206ENST00000448971 RPUSD2Q8IZ73 545 aaKnown RBP16.69■□□□□ 0.26
USP39-206ENST00000448971 ADAMTS19Q8TE59 1207 aa16.69■□□□□ 0.26
USP39-206ENST00000448971 IL17RAQ96F46 866 aa16.69■□□□□ 0.26
USP39-206ENST00000448971 ZFP91Q96JP5 570 aaPredicted RBP16.69■□□□□ 0.26
USP39-206ENST00000448971 UPF2Q9HAU5 1272 aaKnown RBP16.69■□□□□ 0.26
USP39-206ENST00000448971 GTF3C3Q9Y5Q9 886 aa16.69■□□□□ 0.26
USP39-206ENST00000448971 TCF20Q9UGU0 1960 aaKnown RBP16.68■□□□□ 0.26
USP39-206ENST00000448971 SMCO2A6NFE2 343 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 GH1P01241 217 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 MYOGP15173 224 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 NEK4P51957 841 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 NTRK3Q16288 839 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 LY6KQ17RY6 165 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 VSIG10LQ86VR7 867 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 CCDC148Q8NFR7 591 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 SCLYQ96I15 445 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 ALDH8A1Q9H2A2 487 aaPredicted RBP16.68■□□□□ 0.26
USP39-206ENST00000448971 RIC8AQ9NPQ8 531 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 TPCN1Q9ULQ1 816 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 SLC4A7Q9Y6M7 1214 aa16.68■□□□□ 0.26
USP39-206ENST00000448971 STAM2O75886 525 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 CDKL5O76039 1030 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 MYL3P08590 195 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 SSRP1Q08945 709 aaKnown RBP16.67■□□□□ 0.26
USP39-206ENST00000448971 SCRN1Q12765 414 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 PCNX4Q63HM2 1172 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 PGBD1Q96JS3 809 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 C22orf23Q9BZE7 217 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 GLT8D2Q9H1C3 349 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 POLR3EQ9NVU0 708 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 PCDHA6Q9UN73 950 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 PCDHA8Q9Y5H6 950 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 PCDHA11Q9Y5I1 949 aa16.67■□□□□ 0.26
USP39-206ENST00000448971 KIAA1217Q5T5P2 1943 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 SORBS3O60504 671 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 RGS20O76081 388 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 BMP1P13497 986 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 AP3B2Q13367 1082 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 PKN1Q16512 942 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 CCDC62Q6P9F0 684 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 KCNV1Q6PIU1 500 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 UHRF1Q96T88 793 aaPredicted RBP16.66■□□□□ 0.26
USP39-206ENST00000448971 ANO3Q9BYT9 981 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 C6orf50Q9HD87 102 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 TRMT13Q9NUP7 481 aaKnown RBP16.66■□□□□ 0.26
USP39-206ENST00000448971 RTEL1Q9NZ71 1219 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 VPS54Q9P1Q0 977 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 RAPGEFL1Q9UHV5 662 aa16.66■□□□□ 0.26
USP39-206ENST00000448971 DDX41Q9UJV9 622 aaKnown RBP16.66■□□□□ 0.26
USP39-206ENST00000448971 SCN5AQ14524 2016 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 ESYT2A0FGR8 921 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 PFKFB2O60825 505 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 DEXIO95424 95 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 CYP2C9P11712 490 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 POU3F3P20264 500 aaPredicted RBP16.65■□□□□ 0.26
USP39-206ENST00000448971 UBA1P22314 1058 aaKnown RBP16.65■□□□□ 0.26
USP39-206ENST00000448971 MRPS9P82933 396 aaKnown RBP16.65■□□□□ 0.26
USP39-206ENST00000448971 PURAQ00577 322 aaKnown RBP16.65■□□□□ 0.26
USP39-206ENST00000448971 ARHGAP1Q07960 439 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 XRRA1Q6P2D8 792 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 NLRX1Q86UT6 975 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 TEX2Q8IWB9 1127 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 DHX37Q8IY37 1157 aaKnown RBP16.65■□□□□ 0.26
USP39-206ENST00000448971 TET1Q8NFU7 2136 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 INPP4AQ96PE3 977 aaPredicted RBP16.65■□□□□ 0.26
USP39-206ENST00000448971 SCN10AQ9Y5Y9 1956 aa16.65■□□□□ 0.26
USP39-206ENST00000448971 FIBPO43427 364 aa16.64■□□□□ 0.25
USP39-206ENST00000448971 GGPS1O95749 300 aa16.64■□□□□ 0.25
USP39-206ENST00000448971 FOSP01100 380 aaPredicted RBP16.64■□□□□ 0.25
USP39-206ENST00000448971 MMP3P08254 477 aa16.64■□□□□ 0.25
USP39-206ENST00000448971 SUPT20HL2P0C7V6 817 aa16.64■□□□□ 0.25
USP39-206ENST00000448971 ATP2A2P16615 1042 aaKnown RBP16.64■□□□□ 0.25
USP39-206ENST00000448971 GNA11P29992 359 aa16.64■□□□□ 0.25
USP39-206ENST00000448971 PPP2R2DQ66LE6 453 aa16.64■□□□□ 0.25
USP39-206ENST00000448971 REXO1Q8N1G1 1221 aaKnown RBP16.64■□□□□ 0.25
USP39-206ENST00000448971 AFG1LQ8WV93 481 aa16.64■□□□□ 0.25
USP39-206ENST00000448971 TMEM260Q9NX78 707 aa16.64■□□□□ 0.25
USP39-206ENST00000448971 BRWD1Q9NSI6 2320 aa16.63■□□□□ 0.25
USP39-206ENST00000448971 A6NJR5 290 aa16.63■□□□□ 0.25
USP39-206ENST00000448971 LARGE1O95461 756 aa16.63■□□□□ 0.25
USP39-206ENST00000448971 PFKMP08237 780 aa16.63■□□□□ 0.25
USP39-206ENST00000448971 NLRP5P59047 1200 aa16.63■□□□□ 0.25
USP39-206ENST00000448971 CHMP4BP1P59074 171 aa16.63■□□□□ 0.25
USP39-206ENST00000448971 LAMC2Q13753 1193 aa16.63■□□□□ 0.25
USP39-206ENST00000448971 JAKMIP3Q5VZ66 844 aa16.63■□□□□ 0.25
USP39-206ENST00000448971 SPDYE1Q8NFV5 336 aaPredicted RBP16.63■□□□□ 0.25
USP39-206ENST00000448971 BICD2Q8TD16 824 aa16.63■□□□□ 0.25
USP39-206ENST00000448971 MTG1Q9BT17 334 aaPredicted RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms