RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 REXO1Q8N1G1 1221 aaKnown RBP7.6□□□□□ -1.19
USP49-205ENST00000448078 SLC17A8Q8NDX2 589 aa7.6□□□□□ -1.19
USP49-205ENST00000448078 PNISRQ8TF01 805 aaKnown RBP7.6□□□□□ -1.19
USP49-205ENST00000448078 CPLX3Q8WVH0 158 aa7.6□□□□□ -1.19
USP49-205ENST00000448078 CFAP53Q96M91 514 aa7.6□□□□□ -1.19
USP49-205ENST00000448078 EYA3Q99504 573 aa7.6□□□□□ -1.19
USP49-205ENST00000448078 UTP14AQ9BVJ6 771 aaKnown RBP7.6□□□□□ -1.19
USP49-205ENST00000448078 RTFDC1Q9BY42 306 aaPredicted RBP7.6□□□□□ -1.19
USP49-205ENST00000448078 TNKS2Q9H2K2 1166 aa7.6□□□□□ -1.19
USP49-205ENST00000448078 ATP13A1Q9HD20 1204 aa7.6□□□□□ -1.19
USP49-205ENST00000448078 GPATCH2Q9NW75 528 aa7.6□□□□□ -1.19
USP49-205ENST00000448078 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.6□□□□□ -1.19
USP49-205ENST00000448078 TJP1Q07157 1748 aa7.6□□□□□ -1.19
USP49-205ENST00000448078 ANKRD26Q9UPS8 1709 aa7.6□□□□□ -1.19
USP49-205ENST00000448078 ZNF865P0CJ78 1059 aaPredicted RBP7.59□□□□□ -1.19
USP49-205ENST00000448078 PIP4K2AP48426 406 aaPredicted RBP7.59□□□□□ -1.19
USP49-205ENST00000448078 INHBEP58166 350 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 RNF4P78317 190 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 HDLBPQ00341 1268 aaKnown RBP7.59□□□□□ -1.19
USP49-205ENST00000448078 TNK2Q07912 1038 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 PAK2Q13177 524 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 TAF7Q15545 349 aaPredicted RBP7.59□□□□□ -1.19
USP49-205ENST00000448078 HLFQ16534 295 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 ZNF792Q3KQV3 632 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 TBC1D10BQ4KMP7 808 aaPredicted RBP7.59□□□□□ -1.19
USP49-205ENST00000448078 OTUD7BQ6GQQ9 843 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 NLRC3Q7RTR2 1065 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 DNAJB8Q8NHS0 232 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 KREMEN1Q96MU8 473 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 CARS2Q9HA77 564 aaKnown RBP7.59□□□□□ -1.19
USP49-205ENST00000448078 PRDM7Q9NQW5 492 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 KIAA1522Q9P206 1035 aaPredicted RBP7.59□□□□□ -1.19
USP49-205ENST00000448078 RRP7AQ9Y3A4 280 aaKnown RBP7.59□□□□□ -1.19
USP49-205ENST00000448078 MRC1P22897 1456 aa7.59□□□□□ -1.19
USP49-205ENST00000448078 PITPNM2Q9BZ72 1349 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 BIN1O00499 593 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 HTATSF1O43719 755 aaKnown RBP7.58□□□□□ -1.2
USP49-205ENST00000448078 TBC1D8O95759 1140 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 IMPDH2P12268 514 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 TAL1P17542 331 aaPredicted RBP7.58□□□□□ -1.2
USP49-205ENST00000448078 GPTP24298 496 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 RACK1P63244 317 aaKnown RBP7.58□□□□□ -1.2
USP49-205ENST00000448078 SLC10A5Q5PT55 438 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 CREG2Q8IUH2 290 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 PIWIL2Q8TC59 973 aaKnown RBP7.58□□□□□ -1.2
USP49-205ENST00000448078 RNF141Q8WVD5 230 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 TMEM40Q8WWA1 233 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 ASPNQ9BXN1 380 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 MKRN2Q9H000 416 aaKnown RBP7.58□□□□□ -1.2
USP49-205ENST00000448078 INPP5FQ9Y2H2 1132 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 TRPM7Q96QT4 1865 aa7.58□□□□□ -1.2
USP49-205ENST00000448078 ADAMTS7Q9UKP4 1686 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 MAP3K15Q6ZN16 1313 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 ADAMTSL1Q8N6G6 1762 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 RGS13O14921 159 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 KCNQ3O43525 872 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 DNAJA2O60884 412 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 CLEC3AO75596 197 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 HSP90B1P14625 803 aaKnown RBP7.57□□□□□ -1.2
USP49-205ENST00000448078 FUT4P22083 530 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 ERCC5P28715 1186 aaPredicted RBP7.57□□□□□ -1.2
USP49-205ENST00000448078 TPP2P29144 1249 aaPredicted RBP7.57□□□□□ -1.2
USP49-205ENST00000448078 POLR2BP30876 1174 aaKnown RBP7.57□□□□□ -1.2
USP49-205ENST00000448078 TM4SF4P48230 202 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 HSP90AB3PQ58FF7 597 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 SUSD4Q5VX71 490 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 C22orf34Q6ZV56 151 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 SLITRK4Q8IW52 837 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 ZNF428Q96B54 188 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 GPRASP2Q96D09 838 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.57□□□□□ -1.2
USP49-205ENST00000448078 EHMT1Q9H9B1 1298 aa7.57□□□□□ -1.2
USP49-205ENST00000448078 SCN11AQ9UI33 1791 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 ANKRD31Q8N7Z5 1873 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 SSU72P8A0A1W2PR75 194 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 PSMD14O00487 310 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 LRRN2O75325 713 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 WDHD1O75717 1129 aaPredicted RBP7.56□□□□□ -1.2
USP49-205ENST00000448078 ATE1O95260 518 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 RAD51AP2Q09MP3 1159 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 MCTP1Q6DN14 999 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 CCDC81Q6ZN84 652 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 ARMC9Q7Z3E5 817 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 THAP5Q7Z6K1 395 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 PPP1R13LQ8WUF5 828 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 ATG4CQ96DT6 458 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 CDCA5Q96FF9 252 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 ERO1AQ96HE7 468 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 SPATA32Q96LK8 384 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 ANTXR1Q9H6X2 564 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 DUSP13Q9UII6 198 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 PPT2Q9UMR5 302 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 EFR3BQ9Y2G0 817 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 TRIM17Q9Y577 477 aa7.56□□□□□ -1.2
USP49-205ENST00000448078 ADM5C9JUS6 153 aa7.55□□□□□ -1.2
USP49-205ENST00000448078 PAX4O43316 350 aa7.55□□□□□ -1.2
USP49-205ENST00000448078 MYL6BP14649 208 aa7.55□□□□□ -1.2
USP49-205ENST00000448078 MMP14P50281 582 aa7.55□□□□□ -1.2
USP49-205ENST00000448078 FXR1P51114 621 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP49-205ENST00000448078 GRAPQ13588 217 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms