RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 BACH1O14867 736 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 PRPF6O94906 941 aaKnown RBP13.04□□□□□ -0.32
MSH6-204ENST00000445503 ACTN1P12814 892 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 XRCC5P13010 732 aaKnown RBP13.04□□□□□ -0.32
MSH6-204ENST00000445503 TADA2BQ86TJ2 420 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 CCDC25Q86WR0 208 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 CEP57Q86XR8 500 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 C4orf32Q8N8J7 132 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 DYDC1Q8WWB3 177 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 ERGIC2Q96RQ1 377 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 PCDHA1Q9Y5I3 950 aa13.04□□□□□ -0.32
MSH6-204ENST00000445503 GRB10Q13322 594 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 DOK7Q18PE1 504 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 ZMYND12Q9H0C1 365 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 EPB41P11171 864 aaKnown RBP13.03□□□□□ -0.32
MSH6-204ENST00000445503 ARFGAP2Q8N6H7 521 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 MTMR8Q96EF0 704 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 NUCKS1Q9H1E3 243 aaKnown RBP13.03□□□□□ -0.32
MSH6-204ENST00000445503 KCPQ6ZWJ8 1503 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 KLRC1P26715 233 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 EXOC3L4Q17RC7 722 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 GBP6Q6ZN66 633 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 LMBR1Q8WVP7 490 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 NT5C3AQ9H0P0 336 aa13.03□□□□□ -0.32
MSH6-204ENST00000445503 MARF1Q9Y4F3 1742 aaKnown RBP13.03□□□□□ -0.32
MSH6-204ENST00000445503 PVALEFA0A1B0GWK0 134 aa13.02□□□□□ -0.32
MSH6-204ENST00000445503 USP17L10C9JJH3 530 aa13.02□□□□□ -0.32
MSH6-204ENST00000445503 ZIM3Q96PE6 472 aa13.02□□□□□ -0.32
MSH6-204ENST00000445503 PALM3A6NDB9 673 aaPredicted RBP13.02□□□□□ -0.32
MSH6-204ENST00000445503 NKRFO15226 690 aaKnown RBP eCLIP13.02□□□□□ -0.32
MSH6-204ENST00000445503 FLOT1O75955 427 aa13.02□□□□□ -0.32
MSH6-204ENST00000445503 NR1D1P20393 614 aa13.02□□□□□ -0.32
MSH6-204ENST00000445503 ALS2CLQ60I27 953 aa13.02□□□□□ -0.32
MSH6-204ENST00000445503 DDX42Q86XP3 938 aaKnown RBP eCLIP13.02□□□□□ -0.32
MSH6-204ENST00000445503 CREG2Q8IUH2 290 aa13.02□□□□□ -0.32
MSH6-204ENST00000445503 DDX47Q9H0S4 455 aaKnown RBP13.02□□□□□ -0.32
MSH6-204ENST00000445503 PLAAQ9Y263 795 aa13.02□□□□□ -0.32
MSH6-204ENST00000445503 AKR1B1P15121 316 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 CYP2J2P51589 502 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 KCNH2Q12809 1159 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 FBXW10Q5XX13 1052 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 SLC51AQ86UW1 340 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 MYCT1Q8N699 235 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 OR2W6PQ8NHA6 318 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 NEDD1Q8NHV4 660 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 HDAC9Q9UKV0 1011 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 LEMD3Q9Y2U8 911 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 POTEFA5A3E0 1075 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 HGSO14964 777 aaPredicted RBP13.02□□□□□ -0.33
MSH6-204ENST00000445503 ZNF263O14978 683 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 GFPT2O94808 682 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 H2AFZP0C0S5 128 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 POTEIP0CG38 1075 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 RPL13P26373 211 aaKnown RBP13.02□□□□□ -0.33
MSH6-204ENST00000445503 SSR1P43307 286 aaKnown RBP13.02□□□□□ -0.33
MSH6-204ENST00000445503 CACNB3P54284 484 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 MEA1Q16626 185 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 POTEGQ6S5H5 508 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 POTEEQ6S8J3 1075 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 H2AFVQ71UI9 128 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 TPH2Q8IWU9 490 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 CCDC26Q8TAB7 109 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 LRRC45Q96CN5 670 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 CABS1Q96KC9 395 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 PACSIN1Q9BY11 444 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 UBXN6Q9BZV1 441 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 CD209Q9NNX6 404 aa13.02□□□□□ -0.33
MSH6-204ENST00000445503 MEX3CQ5U5Q3 659 aaKnown RBP13.01□□□□□ -0.33
MSH6-204ENST00000445503 ALKBH5Q6P6C2 394 aaKnown RBP13.01□□□□□ -0.33
MSH6-204ENST00000445503 TSEN2Q8NCE0 465 aaKnown RBP13.01□□□□□ -0.33
MSH6-204ENST00000445503 SCLT1Q96NL6 688 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 SPZ1Q9BXG8 430 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 ZBTB21Q9ULJ3 1066 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 TNS2Q63HR2 1409 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 TULP2O00295 520 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 SEC24CP53992 1094 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 MIIPQ5JXC2 388 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 HAUS3Q68CZ6 603 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 KCNK18Q7Z418 384 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 MMGT1Q8N4V1 131 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 CTNNBL1Q8WYA6 563 aaPredicted RBP13.01□□□□□ -0.33
MSH6-204ENST00000445503 CEP72Q9P209 647 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 GOLGA6L10A0A0M3HER8 536 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 GNA14O95837 355 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 CENPPQ6IPU0 288 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 ATP6V0A2Q9Y487 856 aa13.01□□□□□ -0.33
MSH6-204ENST00000445503 A0A087X0T9 212 aa13□□□□□ -0.33
MSH6-204ENST00000445503 GLI1P08151 1106 aa13□□□□□ -0.33
MSH6-204ENST00000445503 FAM228BP0C875 321 aa13□□□□□ -0.33
MSH6-204ENST00000445503 TNFAIP3P21580 790 aa13□□□□□ -0.33
MSH6-204ENST00000445503 UBXN2AP68543 259 aa13□□□□□ -0.33
MSH6-204ENST00000445503 HS2ST1Q7LGA3 356 aa13□□□□□ -0.33
MSH6-204ENST00000445503 UTP11Q9Y3A2 253 aaKnown RBP13□□□□□ -0.33
MSH6-204ENST00000445503 CALUO43852 315 aaPredicted RBP13□□□□□ -0.33
MSH6-204ENST00000445503 CORO7P57737 925 aa13□□□□□ -0.33
MSH6-204ENST00000445503 ASPRV1Q53RT3 343 aa13□□□□□ -0.33
MSH6-204ENST00000445503 PPP1R3FQ6ZSY5 799 aaPredicted RBP13□□□□□ -0.33
MSH6-204ENST00000445503 ARHGEF1Q92888 912 aaKnown RBP13□□□□□ -0.33
MSH6-204ENST00000445503 NARFQ9UHQ1 456 aa13□□□□□ -0.33
MSH6-204ENST00000445503 DDX39AO00148 427 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms