RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 CCDC65Q8IXS2 484 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 TRIM58Q8NG06 486 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 AKT1S1Q96B36 256 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 CEP63Q96MT8 703 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 KCTD10Q9H3F6 313 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 PDE11AQ9HCR9 933 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 TBC1D7Q9P0N9 293 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 STAT3P40763 770 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 MARSP56192 900 aaKnown RBP17.72■□□□□ 0.43
SHQ1-202ENST00000444040 HDLBPQ00341 1268 aaKnown RBP17.72■□□□□ 0.43
SHQ1-202ENST00000444040 CASP8Q14790 479 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 ARSHQ5FYA8 562 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 HGSNATQ68CP4 663 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 ARHGAP27Q6ZUM4 889 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 GPBP1Q86WP2 473 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 NEK11Q8NG66 645 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 ETNPPLQ8TBG4 499 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 SCFD1Q8WVM8 642 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 TMX4Q9H1E5 349 aaPredicted RBP17.72■□□□□ 0.43
SHQ1-202ENST00000444040 JRKLQ9Y4A0 524 aa17.72■□□□□ 0.43
SHQ1-202ENST00000444040 NPM3O75607 178 aaKnown RBP17.71■□□□□ 0.43
SHQ1-202ENST00000444040 NOL4O94818 638 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 SLC12A3P55017 1021 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 CACNB1Q02641 598 aaPredicted RBP17.71■□□□□ 0.43
SHQ1-202ENST00000444040 SLFN12Q8IYM2 578 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 F5H6K3 240 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 MMP10P09238 476 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 HSPA1LP34931 641 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 ARHGAP4P98171 946 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 ICA1Q05084 483 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 KLRC3Q07444 240 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 MAPK8IP2Q13387 824 aaPredicted RBP17.71■□□□□ 0.43
SHQ1-202ENST00000444040 TRIM59Q8IWR1 403 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 ZC3H3Q8IXZ2 948 aaKnown RBP17.71■□□□□ 0.43
SHQ1-202ENST00000444040 TANGO6Q9C0B7 1094 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 DEF6Q9H4E7 631 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 MLXIPQ9HAP2 919 aa17.71■□□□□ 0.43
SHQ1-202ENST00000444040 SSU72P8A0A1W2PR75 194 aa17.71■□□□□ 0.42
SHQ1-202ENST00000444040 PJA2O43164 708 aa17.71■□□□□ 0.42
SHQ1-202ENST00000444040 AKR1B10O60218 316 aa17.71■□□□□ 0.42
SHQ1-202ENST00000444040 HMGB2P26583 209 aaKnown RBP17.71■□□□□ 0.42
SHQ1-202ENST00000444040 CCDC40Q4G0X9 1142 aa17.71■□□□□ 0.42
SHQ1-202ENST00000444040 HERC4Q5GLZ8 1057 aaPredicted RBP17.71■□□□□ 0.42
SHQ1-202ENST00000444040 LENG9Q96B70 501 aa17.71■□□□□ 0.42
SHQ1-202ENST00000444040 JADE2Q9NQC1 790 aa17.71■□□□□ 0.42
SHQ1-202ENST00000444040 SNX12Q9UMY4 172 aa17.71■□□□□ 0.42
SHQ1-202ENST00000444040 PITPNM2Q9BZ72 1349 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 BRWD3Q6RI45 1802 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 TARSL2A2RTX5 802 aaKnown RBP17.7■□□□□ 0.42
SHQ1-202ENST00000444040 TACC1O75410 805 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 TMEM179Q6ZVK1 233 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 CREG2Q8IUH2 290 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 NELFCDQ8IXH7 590 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 AMNQ9BXJ7 453 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 POTEFA5A3E0 1075 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 GNA14O95837 355 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 POTEIP0CG38 1075 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 Q4G0T1 1027 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 POTEGQ6S5H5 508 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 POTEEQ6S8J3 1075 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 CACNA2D4Q7Z3S7 1137 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 CATSPER3Q86XQ3 398 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 GPIHBP1Q8IV16 184 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 GMCL1P1Q8NEA9 526 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 EMILIN3Q9NT22 766 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 RNF216Q9NWF9 866 aaPredicted RBP17.7■□□□□ 0.42
SHQ1-202ENST00000444040 CEP72Q9P209 647 aa17.7■□□□□ 0.42
SHQ1-202ENST00000444040 ERICH4A6NGS2 130 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 LRRIQ3A6PVS8 624 aaPredicted RBP17.69■□□□□ 0.42
SHQ1-202ENST00000444040 TLR2O60603 784 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 MOCS3O95396 460 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 PRLRP16471 622 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 MMP14P50281 582 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 RBM5P52756 815 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHQ1-202ENST00000444040 SNAP25P60880 206 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 ZNF622Q969S3 477 aaKnown RBP eCLIP17.69■□□□□ 0.428e-7■■■□□ 14.9
SHQ1-202ENST00000444040 GMCL1Q96IK5 515 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 SALL4Q9UJQ4 1053 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 TBX3O15119 743 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 EIF3JO75822 258 aaKnown RBP17.69■□□□□ 0.42
SHQ1-202ENST00000444040 GDF11O95390 407 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 MAGEA1P43355 309 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 RAD51AP2Q09MP3 1159 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 PRR16Q569H4 304 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 FAM83BQ5T0W9 1011 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 SYN2Q92777 582 aaPredicted RBP17.69■□□□□ 0.42
SHQ1-202ENST00000444040 ADAM21Q9UKJ8 722 aa17.69■□□□□ 0.42
SHQ1-202ENST00000444040 FAM86B1E9PN63 330 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 RBAK-RBAKDNI3L0D1 243 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 ECE2O60344 883 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 NDUFB10O96000 172 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 FAM86B2P0C5J1 330 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 SPATA31C1P0DKV0 1188 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 GYS2P54840 703 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 JAG1P78504 1218 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 GFPT1Q06210 699 aaPredicted RBP17.68■□□□□ 0.42
SHQ1-202ENST00000444040 GPS2Q13227 327 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 HAUS3Q68CZ6 603 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 MCTP2Q6DN12 878 aa17.68■□□□□ 0.42
SHQ1-202ENST00000444040 ZNF572Q7Z3I7 529 aaPredicted RBP17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms