RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 TLR3O15455 904 aaKnown RBP21.24■□□□□ 0.99
SHH-204ENST00000441114 MAFGO15525 162 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 CYP3A4P08684 503 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 FAM86B2P0C5J1 330 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 TRIM29Q14134 588 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 ANKRD33Q7Z3H0 272 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 FAM177A1Q8N128 213 aaPredicted RBP21.24■□□□□ 0.99
SHH-204ENST00000441114 OXER1Q8TDS5 423 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 TBCKQ8TEA7 893 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 CRYGNQ8WXF5 182 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 LLPHQ9BRT6 129 aaKnown RBP21.24■□□□□ 0.99
SHH-204ENST00000441114 PDLIM7Q9NR12 457 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 TMEM39AQ9NV64 488 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 SCN10AQ9Y5Y9 1956 aa21.24■□□□□ 0.99
SHH-204ENST00000441114 M0R2N6 131 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 MEIS1O00470 390 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 PPFIA4O75335 1185 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 FAAP100Q0VG06 881 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 UTP14CQ5TAP6 766 aaKnown RBP21.23■□□□□ 0.99
SHH-204ENST00000441114 FAM126BQ8IXS8 530 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 SLC43A3Q8NBI5 491 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 KAT2BQ92831 832 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 TOX2Q96NM4 488 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 GPR20Q99678 358 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 AGO4Q9HCK5 861 aaKnown RBP21.23■□□□□ 0.99
SHH-204ENST00000441114 DNAH12Q6ZR08 3092 aa21.23■□□□□ 0.99
SHH-204ENST00000441114 CCDC194A0A1B0GVG4 234 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 TRIM43BA6NCK2 446 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 PSEN2P49810 448 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 MDM2Q00987 491 aaPredicted RBP21.22■□□□□ 0.99
SHH-204ENST00000441114 GUCY1B3Q02153 619 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 NONOQ15233 471 aaKnown RBP eCLIP21.22■□□□□ 0.99
SHH-204ENST00000441114 PRR16Q569H4 304 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 CHRDL2Q6WN34 429 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 KRT25Q7Z3Z0 450 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 FAM184AQ8NB25 1140 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 TRIM43Q96BQ3 446 aaPredicted RBP21.22■□□□□ 0.99
SHH-204ENST00000441114 TMX3Q96JJ7 454 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 SDF4Q9BRK5 362 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 TRPV6Q9H1D0 765 aa21.22■□□□□ 0.99
SHH-204ENST00000441114 IGLV3-22A0A075B6J6 115 aa21.21■□□□□ 0.99
SHH-204ENST00000441114 DDX39AO00148 427 aaKnown RBP21.21■□□□□ 0.99
SHH-204ENST00000441114 KRT2P35908 639 aa21.21■□□□□ 0.99
SHH-204ENST00000441114 MFSD10Q14728 455 aa21.21■□□□□ 0.99
SHH-204ENST00000441114 INF2Q27J81 1249 aa21.21■□□□□ 0.99
SHH-204ENST00000441114 KRT40Q6A162 431 aa21.21■□□□□ 0.99
SHH-204ENST00000441114 NIPA1Q7RTP0 329 aa21.21■□□□□ 0.99
SHH-204ENST00000441114 IL27Q8NEV9 243 aa21.21■□□□□ 0.99
SHH-204ENST00000441114 LBHD1Q9BQE6 289 aaPredicted RBP21.21■□□□□ 0.99
SHH-204ENST00000441114 BRMS1Q9HCU9 246 aa21.21■□□□□ 0.99
SHH-204ENST00000441114 EDIL3O43854 480 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 B4GALT4O60513 344 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 LGALS2P05162 132 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 MAGEA10P43363 369 aaPredicted RBP21.2■□□□□ 0.98
SHH-204ENST00000441114 MCM2P49736 904 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 USP11P51784 963 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 HMGN5P82970 282 aaKnown RBP21.2■□□□□ 0.98
SHH-204ENST00000441114 NR5A1Q13285 461 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 ITGB3BPQ13352 177 aaPredicted RBP21.2■□□□□ 0.98
SHH-204ENST00000441114 KIAA0753Q2KHM9 967 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 PIK3AP1Q6ZUJ8 805 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 ZNF577Q9BSK1 485 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 C16orf70Q9BSU1 422 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 KATNAL1Q9BW62 490 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 SEZ6LQ9BYH1 1024 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 JPH1Q9HDC5 661 aaPredicted RBP21.2■□□□□ 0.98
SHH-204ENST00000441114 TRMT13Q9NUP7 481 aaKnown RBP21.2■□□□□ 0.98
SHH-204ENST00000441114 SLC9A2Q9UBY0 812 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 LTBP2Q14767 1821 aa21.2■□□□□ 0.98
SHH-204ENST00000441114 GSTTP1A0A1W2PQM5 241 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 F2P00734 622 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 CD4P01730 458 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 MMP1P03956 469 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 HOXD8P13378 290 aaPredicted RBP21.19■□□□□ 0.98
SHH-204ENST00000441114 RAG1P15918 1043 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 CIITAP33076 1130 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 TCF7P36402 384 aaPredicted RBP21.19■□□□□ 0.98
SHH-204ENST00000441114 NFRKBQ6P4R8 1299 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 TRIM50Q86XT4 487 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 C7orf31Q8N865 590 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 SEPT1Q8WYJ6 367 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 C8orf76Q96K31 380 aa21.19■□□□□ 0.98
SHH-204ENST00000441114 COLQQ9Y215 455 aaPredicted RBP21.19■□□□□ 0.98
SHH-204ENST00000441114 BTBD18B2RXH4 712 aa21.18■□□□□ 0.98
SHH-204ENST00000441114 H3BRB1 525 aa21.18■□□□□ 0.98
SHH-204ENST00000441114 IPO5O00410 1097 aaKnown RBP21.18■□□□□ 0.98
SHH-204ENST00000441114 TDP2O95551 362 aa21.18■□□□□ 0.98
SHH-204ENST00000441114 SETQ01105 290 aaPredicted RBP21.18■□□□□ 0.98
SHH-204ENST00000441114 LETM2Q2VYF4 491 aa21.18■□□□□ 0.98
SHH-204ENST00000441114 DIS3L2Q8IYB7 885 aaKnown RBP21.18■□□□□ 0.98
SHH-204ENST00000441114 BADQ92934 168 aa21.18■□□□□ 0.98
SHH-204ENST00000441114 PPP1R12CQ9BZL4 782 aa21.18■□□□□ 0.98
SHH-204ENST00000441114 TUT1Q9H6E5 874 aaKnown RBP21.18■□□□□ 0.98
SHH-204ENST00000441114 HDAC6Q9UBN7 1215 aa21.18■□□□□ 0.98
SHH-204ENST00000441114 NFASCO94856 1347 aa21.18■□□□□ 0.98
SHH-204ENST00000441114 FAM205CA6NFA0 338 aa21.17■□□□□ 0.98
SHH-204ENST00000441114 HAS3O00219 553 aa21.17■□□□□ 0.98
SHH-204ENST00000441114 KIAA0355O15063 1070 aa21.17■□□□□ 0.98
SHH-204ENST00000441114 CYP2C9P11712 490 aa21.17■□□□□ 0.98
SHH-204ENST00000441114 ITGB8P26012 769 aa21.17■□□□□ 0.98
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