RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 WASF1Q92558 559 aa11.94□□□□□ -0.5
MCF2L-216ENST00000439475 KAT2BQ92831 832 aa11.94□□□□□ -0.5
MCF2L-216ENST00000439475 TNPO1Q92973 898 aaKnown RBP11.94□□□□□ -0.5
MCF2L-216ENST00000439475 SDF4Q9BRK5 362 aa11.94□□□□□ -0.5
MCF2L-216ENST00000439475 MTIF3Q9H2K0 278 aaKnown RBP11.94□□□□□ -0.5
MCF2L-216ENST00000439475 TUT1Q9H6E5 874 aaKnown RBP11.94□□□□□ -0.5
MCF2L-216ENST00000439475 UPF2Q9HAU5 1272 aaKnown RBP11.94□□□□□ -0.5
MCF2L-216ENST00000439475 TRMT13Q9NUP7 481 aaKnown RBP11.94□□□□□ -0.5
MCF2L-216ENST00000439475 TMEM260Q9NX78 707 aa11.94□□□□□ -0.5
MCF2L-216ENST00000439475 VPS54Q9P1Q0 977 aa11.94□□□□□ -0.5
MCF2L-216ENST00000439475 MKI67P46013 3256 aaKnown RBP11.93□□□□□ -0.5
MCF2L-216ENST00000439475 HAS3O00219 553 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 PFKFB2O60825 505 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 SEC24BO95487 1268 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 LGALS2P05162 132 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 CYP3A4P08684 503 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 GNAT1P11488 350 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 CYP2C9P11712 490 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 CYP2C18P33260 490 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 ARHGAP4P98171 946 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 SP4Q02446 784 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 SCRN1Q12765 414 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 UTP14CQ5TAP6 766 aaKnown RBP11.93□□□□□ -0.5
MCF2L-216ENST00000439475 GPR153Q6NV75 609 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 PSRC1Q6PGN9 363 aaPredicted RBP11.93□□□□□ -0.5
MCF2L-216ENST00000439475 NIPA1Q7RTP0 329 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 CAGE1Q8TC20 777 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 PGBD1Q96JS3 809 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 GPR20Q99678 358 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 NOC4LQ9BVI4 516 aaKnown RBP11.93□□□□□ -0.5
MCF2L-216ENST00000439475 KCNH7Q9NS40 1196 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 HDAC6Q9UBN7 1215 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 GTF2IRD1Q9UHL9 959 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 TCEAL9Q9UHQ7 104 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 LTBP2Q14767 1821 aa11.93□□□□□ -0.5
MCF2L-216ENST00000439475 NFASCO94856 1347 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 CEP290O15078 2479 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 PITPNM1O00562 1244 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 ATP9AO75110 1047 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 PPFIA3O75145 1194 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 PARNO95453 639 aaKnown RBP11.92□□□□□ -0.5
MCF2L-216ENST00000439475 FGBP02675 491 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 PFKMP08237 780 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 ZNF286BP0CG31 522 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 CSF2RAP15509 400 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 KCNA2P16389 499 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 RFC2P35250 354 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 CCL23P55773 120 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 PLA2G4DQ86XP0 818 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 IL27Q8NEV9 243 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 RNPC3Q96LT9 517 aaKnown RBP11.92□□□□□ -0.5
MCF2L-216ENST00000439475 C16orf70Q9BSU1 422 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 SMARCAD1Q9H4L7 1026 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 IL23AQ9NPF7 189 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 TPCN1Q9ULQ1 816 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 PCDHA4Q9UN74 947 aa11.92□□□□□ -0.5
MCF2L-216ENST00000439475 STK36Q9NRP7 1315 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 KAT6AQ92794 2004 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 C17orf102A2RUQ5 167 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 MEIS1O00470 390 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 SLC34A2O95436 690 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 ACTN1P12814 892 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 TCF7P36402 384 aaPredicted RBP11.91□□□□□ -0.5
MCF2L-216ENST00000439475 USP11P51784 963 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 SETQ01105 290 aaPredicted RBP11.91□□□□□ -0.5
MCF2L-216ENST00000439475 PTK7Q13308 1070 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 C9orf50Q5SZB4 431 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 GDF6Q6KF10 455 aaPredicted RBP11.91□□□□□ -0.5
MCF2L-216ENST00000439475 BLIDQ8IZY5 108 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 GLG1Q92896 1179 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 AZI2Q9H6S1 392 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 AGO4Q9HCK5 861 aaKnown RBP11.91□□□□□ -0.5
MCF2L-216ENST00000439475 JPH1Q9HDC5 661 aaPredicted RBP11.91□□□□□ -0.5
MCF2L-216ENST00000439475 ERAP1Q9NZ08 941 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 PKD2L1Q9P0L9 805 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 SLC9A2Q9UBY0 812 aa11.91□□□□□ -0.5
MCF2L-216ENST00000439475 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.9□□□□□ -0.5
MCF2L-216ENST00000439475 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.9□□□□□ -0.5
MCF2L-216ENST00000439475 IQCF3P0C7M6 154 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 ARP10275 920 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 ACRP10323 421 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 C8orf34Q49A92 452 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 TMEM240Q5SV17 173 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 ZNF365Q70YC5 407 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 CYP2W1Q8TAV3 490 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 AFAP1L1Q8TED9 768 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 PPP1R13LQ8WUF5 828 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 ATP6V0A1Q93050 837 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 ZSCAN31Q96LW9 406 aaPredicted RBP11.9□□□□□ -0.5
MCF2L-216ENST00000439475 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.9□□□□□ -0.52e-7■□□□□ 9.1
MCF2L-216ENST00000439475 RNPEPQ9H4A4 650 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 BCAS3Q9H6U6 928 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 TBC1D22BQ9NU19 505 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 PCDH10Q9P2E7 1040 aa11.9□□□□□ -0.5
MCF2L-216ENST00000439475 ORC3Q9UBD5 711 aaPredicted RBP11.9□□□□□ -0.5
MCF2L-216ENST00000439475 TRIP12Q14669 1992 aaPredicted RBP11.89□□□□□ -0.51
MCF2L-216ENST00000439475 GSTTP1A0A1W2PQM5 241 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 SMIM10L2AP0DMW4 78 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 SMIM10L2BP0DMW5 78 aa11.89□□□□□ -0.51
MCF2L-216ENST00000439475 CIITAP33076 1130 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms