RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 BMP3P12645 472 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 IRX4P78413 519 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 LMNB2Q03252 620 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 ARL13BQ3SXY8 428 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 TSC1Q92574 1164 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 DHX36Q9H2U1 1008 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 ZNF18P17022 549 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 CIITAP33076 1130 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 PSMC2P35998 433 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 RPF1Q9H9Y2 349 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 CPSF2Q9P2I0 782 aaKnown RBP13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 HYOU1Q9Y4L1 999 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 PDE1BQ01064 536 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 CCDC93Q567U6 631 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 RNF217Q8TC41 542 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 CCDC17Q96LX7 622 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 CALN1Q9BXU9 219 aa13.06□□□□□ -0.32
CCDC88A-207ENST00000436346 KCNA4P22459 653 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 KLC3Q6P597 504 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 SMYD4Q8IYR2 804 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 FAM71BQ8TC56 605 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 RUNDC3BQ96NL0 473 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 CUEDC2Q9H467 287 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 BBOX1O75936 387 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 CCDC38Q502W7 563 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 NAA35Q5VZE5 725 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 DNAJC24Q6P3W2 148 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 RTKN2Q8IZC4 609 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 IL17REQ8NFR9 667 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 FAM26FQ5R3K3 315 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 PDXDC2PQ6P474 469 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 NACC1Q96RE7 527 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 MRPL46Q9H2W6 279 aaKnown RBP13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 PARVGQ9HBI0 331 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 FAM8A1Q9UBU6 413 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 FMN2Q9NZ56 1722 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 ANGPTL8Q6UXH0 198 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 BTBD18B2RXH4 712 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 IGSF3O75054 1194 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 USP17L8P0C7I0 530 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 ELF1P32519 619 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 CDR2Q01850 454 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 DPH5Q9H2P9 285 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 GOLGA8QA0A0J9YX86 632 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 GOLGA8OA6NCC3 632 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 GOLGA8NF8WBI6 632 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 MYO1FO00160 1098 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 GSTA4O15217 222 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 SZRD1Q7Z422 152 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 RASSF4Q9H2L5 321 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 MADDQ8WXG6 1647 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 PRPSAP2O60256 369 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 MMP10P09238 476 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 MTERF2Q49AM1 385 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 PGBD1Q96JS3 809 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 SUDS3Q9H7L9 328 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 UBE2TQ9NPD8 197 aaPredicted RBP13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 HOMER3Q9NSC5 361 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 SPEF2Q9C093 1822 aa13.05□□□□□ -0.32
CCDC88A-207ENST00000436346 KRT1P04264 644 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 DYNLL1P63167 89 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 DARS2Q6PI48 645 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 EFCAB13Q8IY85 973 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 PCDHA7Q9UN72 937 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 USH1CQ9Y6N9 552 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 RFC1P35251 1148 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 CABS1Q96KC9 395 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 LRRC4Q9HBW1 653 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 OPHN1O60890 802 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 C2orf69Q8N8R5 385 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 TRIML1Q8N9V2 468 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 TBCKQ8TEA7 893 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 EAF2Q96CJ1 260 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 PCIF1Q9H4Z3 704 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 HACD3Q9P035 362 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 ADGRB3O60242 1522 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 STMN1P16949 149 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 SNX1Q13596 522 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 RCN2Q14257 317 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 FOXP1Q9H334 677 aaPredicted RBP13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 GDAQ9Y2T3 454 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 TUBGCP2Q9BSJ2 902 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 ERBB4Q15303 1308 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 POC1B-GALNT4F8VUJ3 575 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 AFPP02771 609 aaKnown RBP13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 INPP1P49441 399 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 GOLGA8FQ08AF8 430 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 GOLGA8DPQ0D2H9 430 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 WHAMMP3Q1A5X7 153 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 SGO2Q562F6 1265 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 RMDN2Q96LZ7 410 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 BAG2O95816 211 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 BRD3Q15059 726 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 MSTO1Q9BUK6 570 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 SDK1Q7Z5N4 2213 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 SNAP25P60880 206 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 AK8Q96MA6 479 aa13.04□□□□□ -0.32
CCDC88A-207ENST00000436346 ABCB11O95342 1321 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 CLIC2O15247 247 aa13.03□□□□□ -0.32
CCDC88A-207ENST00000436346 ARL4AP40617 200 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms