RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 BLMP54132 1417 aaPredicted RBP5.31□□□□□ -1.56
HMGB3-203ENST00000430118 PIK3R4Q99570 1358 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 PLEKHG1Q9ULL1 1385 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 STXBP3O00186 592 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 GABRDO14764 452 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 DHX15O43143 795 aaKnown RBP5.31□□□□□ -1.56
HMGB3-203ENST00000430118 LRRN2O75325 713 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 GLRX3O76003 335 aaKnown RBP5.31□□□□□ -1.56
HMGB3-203ENST00000430118 ALX3O95076 343 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 ZNF205O95201 554 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 MECP2P51608 486 aaKnown RBP5.31□□□□□ -1.56
HMGB3-203ENST00000430118 GTF2A2P52657 109 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 CDK5R2Q13319 367 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 GRIK4Q16099 956 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 DPY19L1Q2PZI1 675 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 CYP27C1Q4G0S4 372 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 FAM102BQ5T8I3 360 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 CXorf57Q6NSI4 855 aaKnown RBP5.31□□□□□ -1.56
HMGB3-203ENST00000430118 OGFOD3Q6PK18 319 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 KCNT2Q6UVM3 1135 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 LHFPL2Q6ZUX7 228 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 CERS3Q8IU89 383 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 CLEC10AQ8IUN9 316 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 ZC3H7AQ8IWR0 971 aaKnown RBP5.31□□□□□ -1.56
HMGB3-203ENST00000430118 BEND7Q8N7W2 519 aaPredicted RBP5.31□□□□□ -1.56
HMGB3-203ENST00000430118 CHST14Q8NCH0 376 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 LINC00116Q8NCU8 138 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 DIO2Q92813 273 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 TSR2Q969E8 191 aaKnown RBP5.31□□□□□ -1.56
HMGB3-203ENST00000430118 FCRL3Q96P31 734 aaPredicted RBP5.31□□□□□ -1.56
HMGB3-203ENST00000430118 MCMBPQ9BTE3 642 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 SLC12A9Q9BXP2 914 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 C19orf44Q9H6X5 657 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 CRTAC1Q9NQ79 661 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 GPATCH2Q9NW75 528 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 ZIM2Q9NZV7 527 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 PCDHA8Q9Y5H6 950 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 CAPN6Q9Y6Q1 641 aa5.31□□□□□ -1.56
HMGB3-203ENST00000430118 ZNF644Q9H582 1327 aaPredicted RBP5.3□□□□□ -1.56
HMGB3-203ENST00000430118 TRPM2O94759 1503 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 GNAT3A8MTJ3 354 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 ABLIM3O94929 683 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 FKBP9O95302 570 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 IGHA1P01876 353 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 CKMP06732 381 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 VAV1P15498 845 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 PAMP19021 973 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 ADCYAP1R1P41586 468 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 SESN3P58005 492 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 IL2P60568 153 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 TNK2Q07912 1038 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 HDAC1Q13547 482 aaPredicted RBP5.3□□□□□ -1.56
HMGB3-203ENST00000430118 TMEM177Q53S58 311 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 ABHD17CQ6PCB6 329 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 CRTC3Q6UUV7 619 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 CYP2R1Q6VVX0 501 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 FKBP9P1Q75LS8 142 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 OTOP1Q7RTM1 612 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 THAP5Q7Z6K1 395 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 WDR75Q8IWA0 830 aaKnown RBP5.3□□□□□ -1.56
HMGB3-203ENST00000430118 ARMC10Q8N2F6 343 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 IGSF22Q8N9C0 903 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 PCDH19Q8TAB3 1148 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 HOOK2Q96ED9 719 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 TCTN2Q96GX1 697 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 ZNF700Q9H0M5 742 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.3□□□□□ -1.56
HMGB3-203ENST00000430118 PTCH1Q13635 1447 aa5.3□□□□□ -1.56
HMGB3-203ENST00000430118 UNC13BO14795 1591 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 LOC102724159A0A0B4J2E5 919 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 FAM47E-STBD1D6RA91 191 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 M0R2C6 588 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 MYO1BO43795 1136 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 KRT18P05783 430 aaKnown RBP5.29□□□□□ -1.56
HMGB3-203ENST00000430118 FAM87AP0C7U9 286 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 IREB2P48200 963 aaKnown RBP5.29□□□□□ -1.56
HMGB3-203ENST00000430118 PCBP3P57721 371 aaKnown RBP5.29□□□□□ -1.56
HMGB3-203ENST00000430118 UBE4AQ14139 1066 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 MBTPS1Q14703 1052 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 PWP2Q15269 919 aaKnown RBP5.29□□□□□ -1.56
HMGB3-203ENST00000430118 NFKBIBQ15653 356 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 CPSF6Q16630 551 aaKnown RBP eCLIP5.29□□□□□ -1.56
HMGB3-203ENST00000430118 ATP13A4Q4VNC1 1196 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 TMEM240Q5SV17 173 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 IQSEC1Q6DN90 963 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 RNF111Q6ZNA4 994 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 BRINP3Q76B58 766 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 C16orf59Q7L2K0 433 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 TXNRD3Q86VQ6 643 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 TSPYL5Q86VY4 417 aaPredicted RBP5.29□□□□□ -1.56
HMGB3-203ENST00000430118 SMC5Q8IY18 1101 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 EFHBQ8N7U6 833 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.29□□□□□ -1.56
HMGB3-203ENST00000430118 FBXW5Q969U6 566 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 FAM83CQ9BQN1 747 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 YIPF4Q9BSR8 244 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 TRIM8Q9BZR9 551 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 EMC7Q9NPA0 242 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 ADGRE2Q9UHX3 823 aa5.29□□□□□ -1.56
HMGB3-203ENST00000430118 EP400Q96L91 3159 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms