RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 SH2B2O14492 632 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-204ENST00000427724 COBLO75128 1261 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 TMEM191BP0C7N4 346 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 PNMA6AP0CW24 399 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-204ENST00000427724 DLATP10515 647 aaKnown RBP11.69□□□□□ -0.54
TCOF1-204ENST00000427724 PAFAH1B1P43034 410 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 INHBEP58166 350 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 PRPF4BQ13523 1007 aaKnown RBP11.69□□□□□ -0.54
TCOF1-204ENST00000427724 E2F4Q16254 413 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 SPDYE2Q495Y8 402 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 ARRDC4Q8NCT1 418 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 TAB2Q9NYJ8 693 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 ROBO1Q9Y6N7 1651 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 ADAMTSL3P82987 1691 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 TMCO5BA8MYB1 307 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 VIL1P09327 827 aaKnown RBP11.69□□□□□ -0.54
TCOF1-204ENST00000427724 IQCB1Q15051 598 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 PPP2R5AQ15172 486 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 CCDC91Q7Z6B0 441 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 TICAM2Q86XR7 235 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 RRP15Q9Y3B9 282 aaKnown RBP11.69□□□□□ -0.54
TCOF1-204ENST00000427724 MED1Q15648 1581 aaPredicted RBP11.69□□□□□ -0.54
TCOF1-204ENST00000427724 NEDD4P46934 1319 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 ZNF541Q9H0D2 1346 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 PXDNLA1KZ92 1463 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 FKTNO75072 461 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 HDXQ7Z353 690 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 FAM83AQ86UY5 434 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 PCDHA4Q9UN74 947 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 ZC3H15Q8WU90 426 aaKnown RBP11.69□□□□□ -0.54
TCOF1-204ENST00000427724 AGBL1Q96MI9 1066 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 MED10Q9BTT4 135 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 PRR12Q9ULL5 1215 aa11.69□□□□□ -0.54
TCOF1-204ENST00000427724 LUC7L2Q9Y383 392 aaKnown RBP11.69□□□□□ -0.54
TCOF1-204ENST00000427724 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-204ENST00000427724 BICDL2A1A5D9 508 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 MYO1CO00159 1063 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 CDC25AP30304 524 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 LIFRP42702 1097 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 ARHGAP4P98171 946 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 DHX40Q8IX18 779 aaKnown RBP11.68□□□□□ -0.54
TCOF1-204ENST00000427724 POMGNT1Q8WZA1 660 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 IWS1Q96ST2 819 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 NYAP2Q9P242 653 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 RGS17Q9UGC6 210 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-204ENST00000427724 FAM184BQ9ULE4 1060 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 GOLGA6L10A6NI86 522 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 CXCL11O14625 94 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 IRF6O14896 467 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 SLFN14P0C7P3 912 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 RAG1P15918 1043 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 KRT9P35527 623 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 RFX5P48382 616 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-204ENST00000427724 VGLL4Q14135 290 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 SWSAP1Q6NVH7 229 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 CNNM4Q6P4Q7 775 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 ALDH8A1Q9H2A2 487 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-204ENST00000427724 ITSN1Q15811 1721 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 KDM3AQ9Y4C1 1321 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 FAM170AA1A519 330 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 ATP2C2O75185 946 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 MAPK4P31152 587 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 MMP14P50281 582 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 CACNB1Q02641 598 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-204ENST00000427724 MSANTD4Q8NCY6 345 aa11.68□□□□□ -0.54
TCOF1-204ENST00000427724 HMX1Q9NP08 348 aaPredicted RBP11.68□□□□□ -0.54
TCOF1-204ENST00000427724 ATRNO75882 1429 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 NEFHP12036 1026 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 IL1R1P14778 569 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 CYLC1P35663 651 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-204ENST00000427724 HERVK_113P62684 666 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 CTTNQ14247 550 aaKnown RBP11.67□□□□□ -0.54
TCOF1-204ENST00000427724 CLMNQ96JQ2 1002 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.67□□□□□ -0.54
TCOF1-204ENST00000427724 COMMD10Q9Y6G5 202 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 IKBKBO14920 756 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 COL9A3Q14050 684 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-204ENST00000427724 CCDC122Q5T0U0 273 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 CEP57Q86XR8 500 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 SMYD4Q8IYR2 804 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-204ENST00000427724 STAG2Q8N3U4 1231 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 GIMAP8Q8ND71 665 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-204ENST00000427724 XPOTO43592 962 aaKnown RBP11.67□□□□□ -0.54
TCOF1-204ENST00000427724 NR3C2P08235 984 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 TNFAIP2Q03169 654 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 CYFIP1Q7L576 1253 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 PPP2R3CQ969Q6 453 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 CCDC42Q96M95 316 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 MYCBPQ99417 103 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-204ENST00000427724 PIDD1Q9HB75 910 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 PCDHAC2Q9Y5I4 1007 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 IFT172Q9UG01 1749 aa11.67□□□□□ -0.54
TCOF1-204ENST00000427724 GCFC2P16383 781 aaKnown RBP11.66□□□□□ -0.54
TCOF1-204ENST00000427724 IFNAR1P17181 557 aa11.66□□□□□ -0.54
TCOF1-204ENST00000427724 MCM3P25205 808 aa11.66□□□□□ -0.54
TCOF1-204ENST00000427724 ARMCX5Q6P1M9 558 aa11.66□□□□□ -0.54
TCOF1-204ENST00000427724 GJA10Q969M2 543 aa11.66□□□□□ -0.54
TCOF1-204ENST00000427724 GDAP1L1Q96MZ0 367 aa11.66□□□□□ -0.54
TCOF1-204ENST00000427724 KMT5AQ9NQR1 393 aa11.66□□□□□ -0.54
TCOF1-204ENST00000427724 PPP6R2O75170 966 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms