RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 EDIL3O43854 480 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 HSF2BPO75031 334 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 PDHBP11177 359 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 GCFC2P16383 781 aaKnown RBP10.8□□□□□ -0.68
CD44-206ENST00000415148 SKOR1P84550 965 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 NAB2Q15742 525 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 C8orf74Q6P047 294 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 SMIM5Q71RC9 77 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.8□□□□□ -0.68
CD44-206ENST00000415148 DNAJC19Q96DA6 116 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 GDF3Q9NR23 364 aa10.8□□□□□ -0.68
CD44-206ENST00000415148 ATAD5Q96QE3 1844 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 C10orf71Q711Q0 1435 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 A0A087WUV0 522 aaPredicted RBP10.79□□□□□ -0.68
CD44-206ENST00000415148 BTNL10A8MVZ5 291 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 CES2O00748 559 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 SLC37A4O43826 429 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 GLI1P08151 1106 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 GUCY2CP25092 1073 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 CLK2P49760 499 aaKnown RBP10.79□□□□□ -0.68
CD44-206ENST00000415148 RASSF7Q02833 373 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 GFPT1Q06210 699 aaPredicted RBP10.79□□□□□ -0.68
CD44-206ENST00000415148 C10orf76Q5T2E6 689 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 ZIM3Q96PE6 472 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 CD209Q9NNX6 404 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 MTMR4Q9NYA4 1195 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 RTCBQ9Y3I0 505 aaKnown RBP10.79□□□□□ -0.68
CD44-206ENST00000415148 GAKO14976 1311 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 PNMA6FA0A0J9YX94 578 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 ATP2B4P23634 1241 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 CARSP49589 748 aaKnown RBP10.79□□□□□ -0.68
CD44-206ENST00000415148 RHBDL3P58872 404 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 COASYQ13057 564 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 FAM83BQ5T0W9 1011 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 EMC10Q5UCC4 262 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 ZC3H3Q8IXZ2 948 aaKnown RBP10.79□□□□□ -0.68
CD44-206ENST00000415148 EIF1ADQ8N9N8 165 aaKnown RBP10.79□□□□□ -0.68
CD44-206ENST00000415148 PROCA1Q8NCQ7 364 aaPredicted RBP10.79□□□□□ -0.68
CD44-206ENST00000415148 C1orf131Q8NDD1 294 aaKnown RBP10.79□□□□□ -0.68
CD44-206ENST00000415148 TBC1D22AQ8WUA7 517 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 RUFY1Q96T51 708 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 TANGO6Q9C0B7 1094 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 UBA5Q9GZZ9 404 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 PANK4Q9NVE7 773 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 AIPL1Q9NZN9 384 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 SWAP70Q9UH65 585 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 ATP6V0A2Q9Y487 856 aa10.79□□□□□ -0.68
CD44-206ENST00000415148 NHSQ6T4R5 1651 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 TRAF5O00463 557 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 NOL4O94818 638 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 TDP2O95551 362 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 MRPL12P52815 198 aaKnown RBP10.78□□□□□ -0.68
CD44-206ENST00000415148 RNASE9P60153 205 aaKnown RBP10.78□□□□□ -0.68
CD44-206ENST00000415148 SLC18A3Q16572 532 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 CCDC40Q4G0X9 1142 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 FAM26FQ5R3K3 315 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 PPP4R3CPQ6ZMV5 832 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 CD302Q8IX05 232 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 CCDC65Q8IXS2 484 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 MREGQ8N565 214 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 CERKQ8TCT0 537 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 PIK3R5Q8WYR1 880 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 GLT8D2Q9H1C3 349 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 PACSIN2Q9UNF0 486 aaPredicted RBP10.78□□□□□ -0.68
CD44-206ENST00000415148 PCDHGC5Q9Y5F6 944 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 FOCADQ5VW36 1801 aa10.78□□□□□ -0.68
CD44-206ENST00000415148 IGKV6D-41A0A0C4DH26 115 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 POTEMA6NI47 508 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 ZNF233A6NK53 670 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 GNPATO15228 680 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 ERLIN2O94905 339 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 SLC1A4P43007 532 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 GUCY1A3Q02108 690 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 TDRD12Q587J7 1177 aaKnown RBP10.77□□□□□ -0.68
CD44-206ENST00000415148 MEI1Q5TIA1 1274 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 DNAAF5Q86Y56 855 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 TRIM59Q8IWR1 403 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 ARHGEF1Q92888 912 aaKnown RBP10.77□□□□□ -0.68
CD44-206ENST00000415148 COA7Q96BR5 231 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 RNPC3Q96LT9 517 aaKnown RBP10.77□□□□□ -0.68
CD44-206ENST00000415148 NUDT12Q9BQG2 462 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 KANSL2Q9H9L4 492 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 DDX25Q9UHL0 483 aaKnown RBP10.77□□□□□ -0.68
CD44-206ENST00000415148 NFU1Q9UMS0 254 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 PCDHA12Q9UN75 941 aa10.77□□□□□ -0.68
CD44-206ENST00000415148 ATP8B3O60423 1300 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 MYO3BQ8WXR4 1341 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 MYO1FO00160 1098 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 EBAG9O00559 213 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 TOM1O60784 492 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 HNRNPH1P31943 449 aaKnown RBP10.77□□□□□ -0.69
CD44-206ENST00000415148 GUCY2FP51841 1108 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 PAK2Q13177 524 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 LRRC41Q15345 812 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 EDRF1Q3B7T1 1238 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 KCNK18Q7Z418 384 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 IQCKQ8N0W5 287 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 HAS1Q92839 578 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 CUL5Q93034 780 aa10.77□□□□□ -0.69
CD44-206ENST00000415148 PCDHA2Q9Y5H9 948 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms