RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 HAUS3Q68CZ6 603 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 BTNL9Q6UXG8 535 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 LRRC31Q6UY01 552 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 CD302Q8IX05 232 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 GMCL1P1Q8NEA9 526 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 NEK11Q8NG66 645 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 DCAF4Q8WV16 495 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 SCFD1Q8WVM8 642 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 IDI2Q9BXS1 227 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 RAB34Q9BZG1 259 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 UBA5Q9GZZ9 404 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 NYAP2Q9P242 653 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 TSKSQ9UJT2 592 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 FAM184BQ9ULE4 1060 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 FAN1Q9Y2M0 1017 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 ATRNL1Q5VV63 1379 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 ARID2Q68CP9 1835 aa4.28□□□□□ -1.72
RTN4-209ENST00000405240 SMCHD1A6NHR9 2005 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SPATA31C1P0DKV0 1188 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 CYP11B2P19099 503 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 PRKCIP41743 596 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 GYS2P54840 703 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 CYP27A1Q02318 531 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 GPS2Q13227 327 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SLC4A8Q2Y0W8 1093 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 IQCEQ6IPM2 695 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 KRT26Q7Z3Y9 468 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 KIAA1328Q86T90 577 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 MYOCDQ8IZQ8 938 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SPATA4Q8NEY3 305 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 RPGRQ92834 1020 aaKnown RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 CUL5Q93034 780 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 CCDC42Q96M95 316 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SELENOOQ9BVL4 669 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 IFIH1Q9BYX4 1025 aaKnown RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 DDX25Q9UHL0 483 aaKnown RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 HYOU1Q9Y4L1 999 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 STK24Q9Y6E0 443 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 ZNF536O15090 1300 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 FRMPD2Q68DX3 1309 aaPredicted RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 PIK3CDO00329 1044 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 USO1O60763 962 aaKnown RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 TACC1O75410 805 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 IRX5P78411 483 aaPredicted RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 SKOR1P84550 965 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 HDLBPQ00341 1268 aaKnown RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 AP3B2Q13367 1082 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SLC15A2Q16348 729 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 ZSCAN26Q16670 478 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 C10orf76Q5T2E6 689 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 KRT79Q5XKE5 535 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 CDC42EP5Q6NZY7 148 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 DPP8Q6V1X1 898 aaPredicted RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 IRF2BP2Q7Z5L9 587 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 FRMD5Q7Z6J6 570 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SLFN11Q7Z7L1 901 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 CCDC17Q96LX7 622 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 ZDHHC15Q96MV8 337 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SYT11Q9BT88 431 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 MLXIPQ9HAP2 919 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SIX2Q9NPC8 291 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 PANK4Q9NVE7 773 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SERPINB13Q9UIV8 391 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 STXBP5LQ9Y2K9 1186 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 OPLAHO14841 1288 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 MOCS3O95396 460 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 IDEP14735 1019 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 MRPL12P52815 198 aaKnown RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 RAD51AP2Q09MP3 1159 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 GIT2Q14161 759 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SLC18A3Q16572 532 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 FAM83BQ5T0W9 1011 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 TTBK2Q6IQ55 1244 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 C2CD5Q86YS7 1000 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SYT2Q8N9I0 419 aaPredicted RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 LRRC57Q8N9N7 239 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SNX29Q8TEQ0 813 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 SMCR8Q8TEV9 937 aaPredicted RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 HDAC7Q8WUI4 952 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.27□□□□□ -1.73
RTN4-209ENST00000405240 PIK3R5Q8WYR1 880 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 GMCL1Q96IK5 515 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 INPP4AQ96PE3 977 aaPredicted RBP4.27□□□□□ -1.73
RTN4-209ENST00000405240 VPS18Q9P253 973 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 VAV3Q9UKW4 847 aa4.27□□□□□ -1.73
RTN4-209ENST00000405240 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP4.26□□□□□ -1.73
RTN4-209ENST00000405240 GTPBP10A4D1E9 387 aaKnown RBP4.26□□□□□ -1.73
RTN4-209ENST00000405240 USP17L10C9JJH3 530 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 PPEF1O14829 653 aaPredicted RBP4.26□□□□□ -1.73
RTN4-209ENST00000405240 SLC16A3O15427 465 aaKnown RBP4.26□□□□□ -1.73
RTN4-209ENST00000405240 RNF40O75150 1001 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 MED24O75448 989 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 IVLP07476 585 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 PLA2G4BP0C869 781 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 SREBF1P36956 1147 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 C2orf54Q08AI8 447 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 TCEAL1Q15170 157 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 SPA17Q15506 151 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 ALS2CLQ60I27 953 aa4.26□□□□□ -1.73
RTN4-209ENST00000405240 EMBQ6PCB8 327 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms