RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 SPATA21Q7Z572 469 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 CCDC65Q8IXS2 484 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 IFNL2Q8IZJ0 200 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 PLBD2Q8NHP8 589 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 SNX29Q8TEQ0 813 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 SDR42E1Q8WUS8 393 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 TGS1Q96RS0 853 aaKnown RBP10.12□□□□□ -0.79
COL28A1-201ENST00000399429 DENND2AQ9ULE3 1009 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 PHF8Q9UPP1 1060 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 IGSF1Q8N6C5 1336 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 ABCC3O15438 1527 aa10.12□□□□□ -0.79
COL28A1-201ENST00000399429 IQGAP1P46940 1657 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 PP2D1A8MPX8 630 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 MAPK13O15264 365 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 TRAPPC3O43617 180 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 EEF2P13639 858 aaKnown RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ANTXR2P58335 489 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 COPS2P61201 443 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 APBB1IPQ7Z5R6 666 aaPredicted RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 SRRM1Q8IYB3 904 aaKnown RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 BLIDQ8IZY5 108 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ZNF483Q8TF39 744 aaPredicted RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 RUNDC3BQ96NL0 473 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 MAP3K14Q99558 947 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 TRIM51Q9BSJ1 452 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 RNF26Q9BY78 433 aaPredicted RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 CELF4Q9BZC1 486 aaKnown RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 KANSL2Q9H9L4 492 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 INO80Q9ULG1 1556 aaPredicted RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 PPP2R5EQ16537 467 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 QPCTQ16769 361 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ARHGAP44Q17R89 818 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 FAM47AQ5JRC9 791 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 CDKAL1Q5VV42 579 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 CYP4F22Q6NT55 531 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ALKBH5Q6P6C2 394 aaKnown RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 MYOCDQ8IZQ8 938 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 MARCH10Q8NA82 808 aaPredicted RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 SNRNP27Q8WVK2 155 aaKnown RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 C6orf50Q9HD87 102 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 DISC1Q9NRI5 854 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 PANK4Q9NVE7 773 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 NOC2LQ9Y3T9 749 aaKnown RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ABCA6Q8N139 1617 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ATP7AQ04656 1500 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 TBCAO75347 108 aaKnown RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 UBTFL6P0CB48 400 aaPredicted RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 SRGNP10124 158 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ATP4AP20648 1035 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ZNF76P36508 570 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ALDH5A1P51649 535 aaPredicted RBP10.11□□□□□ -0.79
COL28A1-201ENST00000399429 CUEDC2Q9H467 287 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 VPS37BQ9H9H4 285 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 ARL2BPQ9Y2Y0 163 aa10.11□□□□□ -0.79
COL28A1-201ENST00000399429 RNF225M0QZC1 329 aaPredicted RBP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 RASSF9O75901 435 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 BRAFP15056 766 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 FGFR4P22455 802 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ADCY8P40145 1251 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 LIFRP42702 1097 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 RBM5P52756 815 aaKnown RBP eCLIP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ZNF211Q13398 564 aaPredicted RBP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ACBD5Q5T8D3 534 aaPredicted RBP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 AGBL2Q5U5Z8 902 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 OLFML2BQ68BL8 750 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 HPS3Q969F9 1004 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 OSBPL7Q9BZF2 842 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 GRID2IPA4D2P6 1211 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 NVLO15381 856 aaKnown RBP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 PRKAB2O43741 272 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ORC4O43929 436 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 SCG2P13521 617 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 STAT1P42224 750 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 KCNJ2P63252 427 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 PPP2R5BQ15173 497 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 TMED2Q15363 201 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 CAVIN4Q5BKX8 364 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ERICH1Q86X53 443 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ST13P4Q8IZP2 240 aaPredicted RBP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 RPGRQ92834 1020 aaKnown RBP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 SYNCQ9H7C4 482 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 C2CD2Q9Y426 696 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 PCDHB13Q9Y5F0 798 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ADGRB2O60241 1585 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 GRIN2DO15399 1336 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 NEDD4P46934 1319 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 EME2A4GXA9 379 aaPredicted RBP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ZCCHC18P0CG32 403 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 PLCG1P19174 1290 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 TTLL7Q6ZT98 887 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 DDX12PQ92771 950 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ERP27Q96DN0 273 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 RILPQ96NA2 401 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 DNAJC7Q99615 494 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 ISCUQ9H1K1 167 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 LY9Q9HBG7 655 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 NPHP4O75161 1426 aaPredicted RBP10.1□□□□□ -0.79
COL28A1-201ENST00000399429 GYG2O15488 501 aa10.1□□□□□ -0.79
COL28A1-201ENST00000399429 TSPY3P0CV98 308 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms