RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 DNM3Q9UQ16 869 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 GJA3Q9Y6H8 435 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 TTC26A0AVF1 554 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 CTNND1O60716 968 aaKnown RBP16.61■□□□□ 0.25
CBX3-202ENST00000396386 INPP5BP32019 993 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 SETQ01105 290 aaPredicted RBP16.61■□□□□ 0.25
CBX3-202ENST00000396386 TBC1D10BQ4KMP7 808 aaPredicted RBP16.61■□□□□ 0.25
CBX3-202ENST00000396386 LRRC55Q6ZSA7 311 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 KCTD17Q8N5Z5 321 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 RETREG2Q8NC44 543 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 GLIS3Q8NEA6 775 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 DEFB129Q9H1M3 183 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 HACL1Q9UJ83 578 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 CAPN11Q9UMQ6 739 aa16.61■□□□□ 0.25
CBX3-202ENST00000396386 LUC7L2Q9Y383 392 aaKnown RBP16.61■□□□□ 0.25
CBX3-202ENST00000396386 NPHP3-ACAD11A0A0J9YXS1 232 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 RNF225M0QZC1 329 aaPredicted RBP16.6■□□□□ 0.25
CBX3-202ENST00000396386 FZD9O00144 591 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 SLU7O95391 586 aaKnown RBP16.6■□□□□ 0.25
CBX3-202ENST00000396386 ERVK-24P63145 666 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 PABPC4Q13310 644 aaKnown RBP eCLIP16.6■□□□□ 0.255e-6■□□□□ 10.7
CBX3-202ENST00000396386 MAN2A1Q16706 1144 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 ZCWPW2Q504Y3 356 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 LRCH2Q5VUJ6 765 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 SAMD7Q7Z3H4 446 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 ZNF710Q8N1W2 664 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 SYT2Q8N9I0 419 aaPredicted RBP16.6■□□□□ 0.25
CBX3-202ENST00000396386 PRPF38AQ8NAV1 312 aaKnown RBP16.6■□□□□ 0.25
CBX3-202ENST00000396386 SLC5A5Q92911 643 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 IQCDQ96DY2 449 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 HOOK2Q96ED9 719 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 ERO1AQ96HE7 468 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 ERGIC2Q96RQ1 377 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 DNAJC7Q99615 494 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 EIF2AK1Q9BQI3 630 aaKnown RBP16.6■□□□□ 0.25
CBX3-202ENST00000396386 MRPL44Q9H9J2 332 aaKnown RBP16.6■□□□□ 0.25
CBX3-202ENST00000396386 CNOT7Q9UIV1 285 aaKnown RBP16.6■□□□□ 0.25
CBX3-202ENST00000396386 RABGAP1Q9Y3P9 1069 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 PCDHA2Q9Y5H9 948 aa16.6■□□□□ 0.25
CBX3-202ENST00000396386 ASTN2O75129 1339 aaPredicted RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 DICER1Q9UPY3 1922 aaKnown RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 MEIS1O00470 390 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 RRP9O43818 475 aaKnown RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 HSD17B4P51659 736 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 CACNB1Q02641 598 aaPredicted RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 NCBP1Q09161 790 aaKnown RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 PPP2R5CQ13362 524 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 TSR1Q2NL82 804 aaKnown RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 VWA3BQ502W6 1294 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 HERC4Q5GLZ8 1057 aaPredicted RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 DCAF15Q66K64 600 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 OR8K1Q8NGG5 319 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 PCMTD1Q96MG8 357 aaPredicted RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 SGIP1Q9BQI5 828 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 TTYH3Q9C0H2 523 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 SPON1Q9HCB6 807 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 TUFT1Q9NNX1 390 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 ZNF536O15090 1300 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 PSMD10O75832 226 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 TRIM21P19474 475 aaKnown RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 GNG11P61952 73 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 PSMC6P62333 389 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 UBXN2AP68543 259 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 CYP4A11Q02928 519 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 CEP55Q53EZ4 464 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 ARSHQ5FYA8 562 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 ANKRD7Q92527 254 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 AGBL1Q96MI9 1066 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 TANGO6Q9C0B7 1094 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 TBC1D7Q9P0N9 293 aa16.59■□□□□ 0.25
CBX3-202ENST00000396386 ZNF215Q9UL58 517 aaPredicted RBP16.59■□□□□ 0.25
CBX3-202ENST00000396386 PHIPQ8WWQ0 1821 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 EML1O00423 815 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 GAS7O60861 476 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 EYA4O95677 639 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 PRELPP51888 382 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 FKBP3Q00688 224 aaKnown RBP16.58■□□□□ 0.24
CBX3-202ENST00000396386 RAD51AP2Q09MP3 1159 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 GIT2Q14161 759 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 FIGNQ5HY92 759 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 CEP63Q96MT8 703 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 FGFBP2Q9BYJ0 223 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 WDR11Q9BZH6 1224 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 ZHX3Q9H4I2 956 aa16.58■□□□□ 0.24
CBX3-202ENST00000396386 RPTORQ8N122 1335 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 ZNF541Q9H0D2 1346 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 A0A1W2PQJ5 194 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 CASQ1P31415 396 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 PPP4R3CPQ6ZMV5 832 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 OTOP1Q7RTM1 612 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 KRT26Q7Z3Y9 468 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 MCF2L2Q86YR7 1114 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 REEP2Q9BRK0 252 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 NDST4Q9H3R1 872 aa16.57■□□□□ 0.24
CBX3-202ENST00000396386 GOLGB1Q14789 3259 aaKnown RBP16.57■□□□□ 0.24
CBX3-202ENST00000396386 USP14P54578 494 aa16.56■□□□□ 0.24
CBX3-202ENST00000396386 ZBED6P86452 979 aa16.56■□□□□ 0.24
CBX3-202ENST00000396386 GHRHRQ02643 423 aa16.56■□□□□ 0.24
CBX3-202ENST00000396386 MTMR2Q13614 643 aa16.56■□□□□ 0.24
CBX3-202ENST00000396386 APOBEC3FQ8IUX4 373 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms