RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 NOVP48745 357 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 NAP1L1P55209 391 aaKnown RBP12.31□□□□□ -0.44
CUX1-204ENST00000393824 DRP2Q13474 957 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 PPP2R5AQ15172 486 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 TTMPQ5BVD1 217 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 CCDC122Q5T0U0 273 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 DPY19L2Q6NUT2 758 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 EMBQ6PCB8 327 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 FANCBQ8NB91 859 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 PNMA1Q8ND90 353 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 GLIS2Q9BZE0 524 aaPredicted RBP12.31□□□□□ -0.44
CUX1-204ENST00000393824 EPN3Q9H201 632 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 TCP11L1Q9NUJ3 509 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 A0A1W2PRG0 241 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 SRRM3A6NNA2 597 aaPredicted RBP12.31□□□□□ -0.44
CUX1-204ENST00000393824 KRT86O43790 486 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 GCFC2P16383 781 aaKnown RBP12.31□□□□□ -0.44
CUX1-204ENST00000393824 ERCC3P19447 782 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 SCP2P22307 547 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 EPHX2P34913 555 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 NF2P35240 595 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 HERVK_113P62684 666 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 KRT83P78385 493 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 C11orf91Q3C1V1 193 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 DGKHQ86XP1 1220 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 OR8K1Q8NGG5 319 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 MAGEC3Q8TD91 643 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 FERMT2Q96AC1 680 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 ARL8AQ96BM9 186 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 CAPZA3Q96KX2 299 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 PLIN4Q96Q06 1357 aa12.31□□□□□ -0.44
CUX1-204ENST00000393824 PYM1Q9BRP8 204 aaKnown RBP12.31□□□□□ -0.44
CUX1-204ENST00000393824 COPB1P53618 953 aaKnown RBP12.3□□□□□ -0.44
CUX1-204ENST00000393824 EPHB4P54760 987 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 ATP2B2Q01814 1243 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 FUT2Q10981 343 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 PDCLQ13371 301 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 PRKG1Q13976 671 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 CRYMQ14894 314 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 RTN1Q16799 776 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 CCDC40Q4G0X9 1142 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 NAA35Q5VZE5 725 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 KDM7AQ6ZMT4 941 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 ANKS1AQ92625 1134 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 CAVIN3Q969G5 261 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 SHISA4Q96DD7 197 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 FAXDC2Q96IV6 333 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 DNAJC7Q99615 494 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 ZNF287Q9HBT7 754 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 ODF2LQ9ULJ1 636 aa12.3□□□□□ -0.44
CUX1-204ENST00000393824 GREB1LQ9C091 1923 aaPredicted RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 CLSTN1O94985 981 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 EEF2P13639 858 aaKnown RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 CCT6AP40227 531 aaKnown RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 ECE1P42892 770 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 MAP3K10Q02779 954 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 DPYDQ12882 1025 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 DGKZQ13574 1117 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 ABCB5Q2M3G0 1257 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 TTC19Q6DKK2 380 aaPredicted RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 USP17L2Q6R6M4 530 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 USP49Q70CQ1 688 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 CAGE1Q8TC20 777 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 CSRNP2Q9H175 543 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 TAF1DQ9H5J8 278 aaPredicted RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 PCDHB6Q9Y5E3 794 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 USP17L5A8MUK1 530 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 TNFRSF8P28908 595 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 LSP1P33241 339 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 SSR1P43307 286 aaKnown RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 EAPPQ56P03 285 aaPredicted RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 KIAA1755Q5JYT7 1200 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 CATIPQ7Z7H3 387 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 SRBD1Q8N5C6 995 aaKnown RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 ACER1Q8TDN7 264 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 ZNF526Q8TF50 670 aaPredicted RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 N4BP2L2Q92802 583 aaPredicted RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 RRP36Q96EU6 259 aaKnown RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 PAGE5Q96GU1 130 aa12.29□□□□□ -0.44
CUX1-204ENST00000393824 PURBQ96QR8 312 aaKnown RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 DMGDHQ9UI17 866 aaKnown RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 HERC5Q9UII4 1024 aaKnown RBP12.29□□□□□ -0.44
CUX1-204ENST00000393824 TRIM75PA6NK02 468 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 HSF2BPO75031 334 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 PRLRP16471 622 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 XBP1P17861 261 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 APBA1Q02410 837 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 NNTQ13423 1086 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 BIRC2Q13490 618 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 TNFAIP1Q13829 316 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 TCP11X2Q5H9J9 407 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 CEP85LQ5SZL2 805 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 C6orf89Q6UWU4 347 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 CREG2Q8IUH2 290 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 CCDC50Q8IVM0 306 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 CCDC13Q8IYE1 715 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 C1orf131Q8NDD1 294 aaKnown RBP12.28□□□□□ -0.44
CUX1-204ENST00000393824 RUFY1Q96T51 708 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 VPS16Q9H269 839 aa12.28□□□□□ -0.44
CUX1-204ENST00000393824 MAD2L2Q9UI95 211 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms