RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 GINS4Q9BRT9 223 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 BRIP1Q9BX63 1249 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 IMPG1Q17R60 797 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 TRIM71Q2Q1W2 868 aaKnown RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 SYNJ2BP-COX16A0A087WUM0 186 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 KRT14P02533 472 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 PAPOLAP51003 745 aaKnown RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 EMBQ6PCB8 327 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 SCG3Q8WXD2 468 aaKnown RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 CFAP36Q96G28 342 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 C10orf88Q9H8K7 445 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 COX16Q9P0S2 106 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 DNAJC6O75061 913 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 EIF6P56537 245 aaKnown RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 MESDQ14696 234 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 ZNF555Q8NEP9 628 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 SLC26A7Q8TE54 656 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 GPBP1L1Q9HC44 474 aaPredicted RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 SELENONQ9NZV5 590 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 GOLGA8TH3BQL2 631 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 GOLGA8HP0CJ92 632 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 CA4P22748 312 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 NCAPG2Q86XI2 1143 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 EDEM3Q9BZQ6 932 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 MYO1EQ12965 1108 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 AARS2Q5JTZ9 985 aaKnown RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 MRPL50Q8N5N7 158 aaKnown RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 C19orf60Q96EN9 201 aa12.51□□□□□ -0.41
VPS13A-205ENST00000376636 ARPP21Q9UBL0 812 aaPredicted RBP12.51□□□□□ -0.41
VPS13A-205ENST00000376636 TOMM70O94826 608 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 E2F4Q16254 413 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 ICE2Q659A1 982 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 NESP48681 1621 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 KRT38O76015 456 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 CAPRIN2Q6IMN6 1127 aaKnown RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 ARMCX5Q6P1M9 558 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 IMPDH2P12268 514 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 PDE6BP35913 854 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 NT5C1BQ96P26 610 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 PLD3Q8IV08 490 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 RRAGDQ9NQL2 400 aaPredicted RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 EIF4G3O43432 1585 aaKnown RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 KCNA1Q09470 495 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 SPATA1Q5VX52 437 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 FAM160B1Q5W0V3 765 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 RGS9BPQ6ZS82 235 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 SMYD3Q9H7B4 428 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 MLXIPQ9HAP2 919 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 NCOA5Q9HCD5 579 aaKnown RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 FOXO3O43524 673 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 CDH2P19022 906 aaPredicted RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 TMPRSS15P98073 1019 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 ADCK1Q86TW2 530 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 PLCH2O75038 1416 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 DMC1Q14565 340 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 TADA1Q96BN2 335 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 GTPBP6O43824 516 aaPredicted RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 KRR1Q13601 381 aaKnown RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 EFTUD2Q15029 972 aaKnown RBP eCLIP12.5□□□□□ -0.412e-7■■■■□ 23.8
VPS13A-205ENST00000376636 ST13P5Q8NFI4 369 aaPredicted RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 TEKT4Q8WW24 435 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 BTBD6Q96KE9 485 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 PKD2L2Q9NZM6 624 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 SEL1LQ9UBV2 794 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 PA2G4Q9UQ80 394 aaKnown RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 GOLGA8MH3BSY2 632 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 HNRNPDLO14979 420 aaKnown RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 NUGGCQ68CJ6 796 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 ABI1Q8IZP0 508 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 UHMK1Q8TAS1 419 aaKnown RBP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 ZNF653Q96CK0 615 aa12.5□□□□□ -0.41
VPS13A-205ENST00000376636 AATFQ9NY61 560 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS13A-205ENST00000376636 SYNGAP1Q96PV0 1343 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 KRT1P04264 644 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 ELMSAN1Q6PJG2 1045 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 MMTAG2Q9BU76 263 aaKnown RBP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 RRM2BQ7LG56 351 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 TESPA1A2RU30 521 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 RASSF9O75901 435 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 TJP3O95049 919 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 IRX1P78414 480 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 KRT40Q6A162 431 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 ARHGEF25Q86VW2 580 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 AS3MTQ9HBK9 375 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 A0A0G2JND7 137 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 TMEM191CA6NGB0 347 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 PRPSAP2O60256 369 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 VCAM1P19320 739 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 COPS2P61201 443 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 CAV1Q03135 178 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 WASHC5Q12768 1159 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 METTL23Q86XA0 190 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 CNBD1Q8NA66 436 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 DIS3Q9Y2L1 958 aaKnown RBP12.49□□□□□ -0.41
VPS13A-205ENST00000376636 CFAP73A6NFT4 308 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 PJA2O43164 708 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 MYL1P05976 194 aa12.49□□□□□ -0.41
VPS13A-205ENST00000376636 CHURC1Q8WUH1 139 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms